Files in patzaw/BED
Biological Entity Dictionary (BED)
.Rbuildignore
.gitattributes
.gitignore
BED.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/BED.R
R/BEIDList.R
R/beIDsToAllScopes.R
R/bedCall.R
R/bedImport.R
R/beidsModule.R
R/cacheBedCall.R
R/cacheBedResult.R
R/checkBeIds.R
R/checkBedCache.R
R/checkBedConn.R
R/cleanDubiousXRef.R
R/clearBedCache.R
R/compareBedInstances.R
R/convBeIdLists.R
R/convBeIds.R
R/convDfBeIds.R
R/dumpEnsCore.R
R/dumpNcbiDb.R
R/dumpNcbiTax.R
R/dumpUniprotDb.R
R/exploreBe.R
R/exploreConvPath.R
R/findBe.R
R/findBeids.R
R/firstCommonUpstreamBe.R
R/genBePath.R
R/genProbePath.R
R/geneIDsToAllScopes.R
R/generics.R
R/getAllBeIdSources.R
R/getBeIdConvTable.R
R/getBeIdDescription.R
R/getBeIdNameTable.R
R/getBeIdNames.R
R/getBeIdSymbolTable.R
R/getBeIdSymbols.R
R/getBeIdURL.R
R/getBeIds.R
R/getDirectOrigin.R
R/getDirectProduct.R
R/getEnsemblGeneIds.R
R/getEnsemblPeptideIds.R
R/getEnsemblTranscriptIds.R
R/getGeneDescription.R
R/getHomTable.R
R/getNcbiGeneTransPep.R
R/getOrgNames.R
R/getRelevantIds.R
R/getTargetedBe.R
R/getTaxId.R
R/getUniprot.R
R/guessIdScope.R
R/identicalScopes.R
R/largestBeSource.R
R/listBe.R
R/listBeIdSources.R
R/listDBAttributes.R
R/listOrganisms.R
R/listPlatforms.R
R/loadBE.R
R/loadBENames.R
R/loadBESymbols.R
R/loadBEVersion.R
R/loadBeAttribute.R
R/loadBedModel.R
R/loadCodesFor.R
R/loadCorrespondsTo.R
R/loadHistory.R
R/loadIsAssociatedTo.R
R/loadIsExpressedAs.R
R/loadIsHomologOf.R
R/loadIsTranslatedIn.R
R/loadLuceneIndexes.R
R/loadNCBIEntrezGOFunctions.R
R/loadNcbiTax.R
R/loadOrganisms.R
R/loadPlf.R
R/loadProbes.R
R/lsBedCache.R
R/registerBEDB.R
R/searchBeid.R
R/searchId.R
R/setBedVersion.R
R/showBedDataModel.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
docs/404.html
docs/BED.html
docs/LICENSE-text.html
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docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/BED.html
docs/articles/img/BED.png
docs/articles/index.html
docs/authors.html
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inst/CITATION
inst/Documentation/BED-Model/BED-lucene-v3.cql
inst/Documentation/BED-Model/BED-lucene-v5.cql
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inst/doc/BED.R
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inst/pkgdown.yml
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man/BED.Rd
man/BEIDList.Rd
man/BEIDs.Rd
man/beIDsToAllScopes.Rd
man/bedCall.Rd
man/bedImport.Rd
man/beidsServer.Rd
man/cacheBedCall.Rd
man/cacheBedResult.Rd
man/checkBeIds.Rd
man/checkBedCache.Rd
man/checkBedConn.Rd
man/cleanDubiousXRef.Rd
man/clearBedCache.Rd
man/compareBedInstances.Rd
man/connectToBed.Rd
man/convBeIdLists.Rd
man/convBeIds.Rd
man/convDfBeIds.Rd
man/dumpEnsCore.Rd
man/dumpNcbiDb.Rd
man/dumpNcbiTax.Rd
man/dumpUniprotDb.Rd
man/exploreBe.Rd
man/exploreConvPath.Rd
man/figures/BED.png
man/filterByBEID.Rd
man/findBe.Rd
man/findBeids.Rd
man/firstCommonUpstreamBe.Rd
man/focusOnScope.BEIDList.Rd
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man/forgetBedConnection.Rd
man/genBePath.Rd
man/genProbePath.Rd
man/geneIDsToAllScopes.Rd
man/getAllBeIdSources.Rd
man/getBeIdConvTable.Rd
man/getBeIdDescription.Rd
man/getBeIdNameTable.Rd
man/getBeIdNames.Rd
man/getBeIdSymbolTable.Rd
man/getBeIdSymbols.Rd
man/getBeIdURL.Rd
man/getBeIds.Rd
man/getDirectOrigin.Rd
man/getDirectProduct.Rd
man/getEnsemblGeneIds.Rd
man/getEnsemblPeptideIds.Rd
man/getEnsemblTranscriptIds.Rd
man/getGeneDescription.Rd
man/getHomTable.Rd
man/getNcbiGeneTransPep.Rd
man/getOrgNames.Rd
man/getRelevantIds.Rd
man/getTargetedBe.Rd
man/getTaxId.Rd
man/getUniprot.Rd
man/guessIdScope.Rd
man/identicalScopes.Rd
man/is.BEIDList.Rd
man/largestBeSource.Rd
man/listBe.Rd
man/listBeIdSources.Rd
man/listDBAttributes.Rd
man/listOrganisms.Rd
man/listPlatforms.Rd
man/loadBE.Rd
man/loadBENames.Rd
man/loadBESymbols.Rd
man/loadBEVersion.Rd
man/loadBeAttribute.Rd
man/loadBedModel.Rd
man/loadBedOtherIndexes.Rd
man/loadBedResult.Rd
man/loadCodesFor.Rd
man/loadCorrespondsTo.Rd
man/loadHistory.Rd
man/loadIsAssociatedTo.Rd
man/loadIsExpressedAs.Rd
man/loadIsHomologOf.Rd
man/loadIsTranslatedIn.Rd
man/loadLuceneIndexes.Rd
man/loadNCBIEntrezGOFunctions.Rd
man/loadNcbiTax.Rd
man/loadOrganisms.Rd
man/loadPlf.Rd
man/loadProbes.Rd
man/lsBedCache.Rd
man/lsBedConnections.Rd
man/metadata-set.Rd
man/metadata.Rd
man/registerBEDB.Rd
man/scope.Rd
man/scopes.Rd
man/searchBeid.Rd
man/searchId.Rd
man/setBedVersion.Rd
man/showBedDataModel.Rd
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