Man pages for paul-shannon/IGV
igvR: integrative genomics viewer

DataFrameAnnotationTrack-classConstructor for DataFrameAnnotationTrack
DataFrameQuantitativeTrack-classConstructor for DataFrameQuantitativeTrack
displayTrackdisplay the specified track in igv
getGenomicRegionObtain the chromosome and coordiates of the currently display...
getTrackNamesGet the names of all the tracks currently displayed in igv
GRangesAnnotationTrack-classConstructor for GRangesAnnotationTrack
GRangesQuantitativeTrack-classConstructor for GRangesQuantitativeTrack
igvAnnotationTrack-classConstructor for igvAnnotationTrack
igvR-classCreate an igvR object
pingTest the connection between your R session and the webapp
QuantitativeTrack-classConstructor for QuantitativeTrack
removeTracksByNameRemove named tracks
setGenomeSpecify the reference genome, currently limited to hg38,...
showGenomicRegionSet the visible region, by explicit chromLoc string, or by...
Track-classConstructor for Track
trackInfoGet basic info about a track: its type, file format, source...
trackSizeRetrieve the size of the QuantitativeTrack
trackSize-DataFrameAnnotationTrack-methodRetrieve the size of the DataFrameAnnotationTrack
trackSize-DataFrameQuantitativeTrack-methodRetrieve the size of the DataFrameQuantitativeTrack
trackSize-GRangesAnnotationTrack-methodRetrieve the size of the GRangesAnnotationTrack
trackSize-GRangesQuantitativeTrack-methodRetrieve the size of the GRangesQuantitativeTrack
trackSize-UCSCBedAnnotationTrack-methodRetrieve the size of theUCSCBedAnnotationTrack
trackSize-UCSCBedGraphQuantitativeTrack-methodRetrieve the size of the UCSCBedGraphQuantitativeTrack
trackSize-VariantTrack-methodRetrieve the size of the VariantTrack
UCSCBedAnnotationTrack-classConstructor for UCSCBedAnnotationTrack
UCSCBedGraphQuantitativeTrack-classConstructor for UCSCBedGraphQuantitativeTrack
VariantTrack-classConstructor for VariantTrack
paul-shannon/IGV documentation built on Sept. 7, 2018, 7:12 p.m.