philliplab/ViralHaplotyper
Viral Haplotyper

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R/sample_data.R

R/sample_data.R
In philliplab/ViralHaplotyper: Viral Haplotyper

Defines functions get_test_AAStringSet

Documented in get_test_AAStringSet 

#' A function that returns a test AAStringSet
#' @param dataset_name The name of the test dataset to return
#' @export

get_test_AAStringSet <- function(dataset_name = 'gag_p24_n128_b001'){
  data_sets <- list(
    'gag_p24_n128_b001' = structure(c("PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLRETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPELIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMRAP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"P------GQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEVAEWDRVHPVHAVPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLSTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVLQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVLQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVLQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVLQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYNRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYNRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQKLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQKLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMIKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEISKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEISKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQDIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPHDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEHIVWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPHDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEHIVWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPHDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEHIVWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPHDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEHIVWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMCSALSEGATPQDLNTMLNTVGGHQAAMQMIKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMIKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNP-----EMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMANNP-----EMYKRWIIIGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNP-----EMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNP-----EMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNP-----EMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNP-----EMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKDFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWERVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNP-----EMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKIVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGRIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNP-----EMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQAQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PI-------MVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQVAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEMYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHTGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLNTVGGHQAAMQMLNETINEEAAEWERVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIVWMANNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQNLNTMLITVGGHQAAMQMLKETINEEAAEWERVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMANNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHRAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMRDP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAITPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RCSDIAGTTSTLQEQIGWMTNNPPVPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTNTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPTRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPTRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQIREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQVAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPVVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PKVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PKVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMCSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWERVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILVL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILVL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNSQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIASGQMREP-RGSDIAGTTSTLKEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHSVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL", 
"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFIPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREP-RGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGL"
), .Names = c("evolveagene_seq0001", "evolveagene_seq0002", "evolveagene_seq0003", "evolveagene_seq0004", "evolveagene_seq0005", "evolveagene_seq0006", "evolveagene_seq0007", "evolveagene_seq0008", 
"evolveagene_seq0009", "evolveagene_seq0010", "evolveagene_seq0011", "evolveagene_seq0012", "evolveagene_seq0013", "evolveagene_seq0014", "evolveagene_seq0015", "evolveagene_seq0016", "evolveagene_seq0017", 
"evolveagene_seq0018", "evolveagene_seq0019", "evolveagene_seq0020", "evolveagene_seq0021", "evolveagene_seq0022", "evolveagene_seq0023", "evolveagene_seq0024", "evolveagene_seq0025", "evolveagene_seq0026", 
"evolveagene_seq0027", "evolveagene_seq0028", "evolveagene_seq0029", "evolveagene_seq0030", "evolveagene_seq0031", "evolveagene_seq0032", "evolveagene_seq0033", "evolveagene_seq0034", "evolveagene_seq0035", 
"evolveagene_seq0036", "evolveagene_seq0037", "evolveagene_seq0038", "evolveagene_seq0039", "evolveagene_seq0040", "evolveagene_seq0041", "evolveagene_seq0042", "evolveagene_seq0043", "evolveagene_seq0044", 
"evolveagene_seq0045", "evolveagene_seq0046", "evolveagene_seq0047", "evolveagene_seq0048", "evolveagene_seq0049", "evolveagene_seq0050", "evolveagene_seq0051", "evolveagene_seq0052", "evolveagene_seq0053", 
"evolveagene_seq0054", "evolveagene_seq0055", "evolveagene_seq0056", "evolveagene_seq0057", "evolveagene_seq0058", "evolveagene_seq0059", "evolveagene_seq0060", "evolveagene_seq0061", "evolveagene_seq0062", 
"evolveagene_seq0063", "evolveagene_seq0064", "evolveagene_seq0065", "evolveagene_seq0066", "evolveagene_seq0067", "evolveagene_seq0068", "evolveagene_seq0069", "evolveagene_seq0070", "evolveagene_seq0071", 
"evolveagene_seq0072", "evolveagene_seq0073", "evolveagene_seq0074", "evolveagene_seq0075", "evolveagene_seq0076", "evolveagene_seq0077", "evolveagene_seq0078", "evolveagene_seq0079", "evolveagene_seq0080", 
"evolveagene_seq0081", "evolveagene_seq0082", "evolveagene_seq0083", "evolveagene_seq0084", "evolveagene_seq0085", "evolveagene_seq0086", "evolveagene_seq0087", "evolveagene_seq0088", "evolveagene_seq0089", 
"evolveagene_seq0090", "evolveagene_seq0091", "evolveagene_seq0092", "evolveagene_seq0093", "evolveagene_seq0094", "evolveagene_seq0095", "evolveagene_seq0096", "evolveagene_seq0097", "evolveagene_seq0098", 
"evolveagene_seq0099", "evolveagene_seq0100", "evolveagene_seq0101", "evolveagene_seq0102", "evolveagene_seq0103", "evolveagene_seq0104", "evolveagene_seq0105", "evolveagene_seq0106", 
"evolveagene_seq0107", "evolveagene_seq0108", "evolveagene_seq0109", "evolveagene_seq0110", "evolveagene_seq0111", "evolveagene_seq0112", "evolveagene_seq0113", "evolveagene_seq0114", 
"evolveagene_seq0115", "evolveagene_seq0116", "evolveagene_seq0117", "evolveagene_seq0118", "evolveagene_seq0119", "evolveagene_seq0120", "evolveagene_seq0121", "evolveagene_seq0122", 
"evolveagene_seq0123", "evolveagene_seq0124", "evolveagene_seq0125", "evolveagene_seq0126", "evolveagene_seq0127", "evolveagene_seq0128"))
    )
  return(AAStringSet(data_sets[[dataset_name]]))
}
philliplab/ViralHaplotyper documentation built on May 25, 2019, 5:05 a.m.

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