plot_phylo_all: plot all trees with study titles and geochronological axis

Description Usage Arguments

View source: R/plots.R

Description

plot all trees with study titles and geochronological axis

Usage

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plot_phylo_all(trees, include = TRUE, individually = TRUE,
  cex = graphics::par("cex"), write = "no", file = "phylo_all")

Arguments

trees

A list of trees as multiPhylo or as a plain list object.

include

Boolean or numeric vector. Default to TRUE, plot all chronograms in trees. If FALSE, exclude chronograms with only two tips. If numeric, plot trees matching the numeric vector.

individually

Boolean indicating if trees should be plotted one by one or all on the same file

cex

a numeric value giving the factor scaling of the tip and node labels (Character EXpansion). The default is to take the current value from the graphical parameters.

write

A character vector of length 1. Use pdf or png to write a file on those formats respectively. Anything else will not write any image file.

file

A character string giving the name of the files. It will be the name of the directory too.


phylotastic/datelife documentation built on Jan. 22, 2019, 12:29 a.m.