ggheatmap: Heatmaps Using ggplot2 This function can be used to create...
In pkimes/pkimes: Patrick Kimes' R Package

Description Usage Arguments Details Value Author(s)

View source: R/ggheatmap.R

Heatmaps Using ggplot2

This function can be used to create heatmaps with dendrograms similar to heatmap.2 using ggplot2 and ggdendro for a more "modern" and clean appearance.

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ggheatmap(data, distance = "euclidean", linkage = "average",
  row_sort = TRUE, col_sort = TRUE, labframe = NULL, rlabframe = NULL,
  colbrew = "Set1", rcolbrew = "Set1", rtext = NULL, fill_title = NULL)

`data`	a numeric matrix of expression, genes x samples, or a `dist` object
`distance`	a character string for `dist`, or a function which returns a `dist` object (default = "euclidean")
`linkage`	a character string for `hclust` to use for clustering (default = "average")
`row_sort`	a logical whether rows should be reordered based on clustering (default = TRUE)
`col_sort`	a logical whether columns should be reordered based on clustering (default = TRUE)
`labframe`	a data.frame of column labels (default = NULL)
`rlabframe`	a data.frame of row labels (default = NULL)
`colbrew`	a vector of strings same length as `labframe` specifying the colors to be used for column labels, if length is 1 same palette is repeated, see Details regarding valid strings (default = "Set1")
`rcolbrew`	a vector of strings same length as `rlabframe` specifying the colors to be used for row labels, if length is 1 same palette is repeated, see Details regarding valid strings (default = "Set1")
`rtext`	a vector of strings with text annotations for rows of heatmap (default = NULL)
`fill_title`	a character string specifying the fill title (default = NULL)