README.md

In powellgenomicslab/scExplore: Single-cell Data Visualization

scExplore

R package for single-cell data visualization

Instalation

devtools::install_github("powellgenomicslab/scExplore")

Examples

Plot merged gene expression signal to detect CD8+ T cells

plotExp(pbmc, gene1 = "CD3D", gene2 = "CD8A", size = 0.2)

Plot divided by cluster information

plotExp(pbmc, gene1 = "CD3D", gene2 = "CD8A", group = "seurat_clusters", size = 0.2)

Plot expression of CD3D in pca

plotFeature(pbmc, "CD3D", reduction = "pca")

Plot clusters

plotFeature(pbmc, "seurat_clusters")

powellgenomicslab/scExplore documentation built on Nov. 5, 2019, 1:12 a.m.