lcmsmap: LC-MS Map
In protViz/protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
lcmsmap R Documentation
LC-MS Map
Description
The function graphs a LC-MS map having for all charge states and each single charge state.
The rt is on the x axis and the y axis represents the peptide mass.
Usage
lcmsmap(data, charges=2:3, score.cutoff = 30, ...)
Arguments
data
an R data object as it can be obtained by mascotDat2RData.pl or
by using mascots export function.
charges
a vector of charge states to be displayed.
score.cutoff
a numeric value taken as score cut-off.
...
pass arguments to plot function.
Author(s)
Christian Panse and Jonas Grossmann 2013;
References
idea taken from from the ISB TPP Pep3D view
PMID: 15228367
protViz/protViz documentation built on Jan. 19, 2024, 8:10 a.m.
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| lcmsmap | R Documentation |
LC-MS Map
Description
The function graphs a LC-MS map having for all charge states and each single charge state. The rt is on the x axis and the y axis represents the peptide mass.
Usage
lcmsmap(data, charges=2:3, score.cutoff = 30, ...)
Arguments
data |
an R data object as it can be obtained by |
charges |
a vector of charge states to be displayed. |
score.cutoff |
a numeric value taken as score cut-off. |
... |
pass arguments to |
Author(s)
Christian Panse and Jonas Grossmann 2013;
References
idea taken from from the ISB TPP Pep3D view PMID: 15228367
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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