Files in protViz/prozor
Minimal Protein Set Explaining Peptide Spectrum Matches

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/DeprecatedAnnotatePeptides.R R/annotatePeptides.R R/createDecoyDB.R R/greedy.R R/hello.R R/loadContaminantsFasta.R R/prepareMatrix.R R/readFasta.R R/removeSignalPeptides.R R/reverseSeq.R R/writeFasta.R R/zzz.R README.md
data/pepprot.tab
data/protpepmeta.tab
data/protpepmetashort.tab
inst/creatingDBs/CreateDB.Rmd inst/creatingDBs/fixCont.Rmd inst/creatingDBs/specAnnotationMilena.Rmd
inst/extdata/Annotation_allSeq.fasta.gz
inst/extdata/Annotation_canSeq.fasta.gz
inst/extdata/Annotation_isoSeq.fasta.gz
inst/extdata/IDResults.txt.gz
inst/extdata/UnimodMappings.txt
inst/extdata/fgcz_ContaminantsWithAnnotation.fasta.gz
inst/extdata/fgcz_ContaminantsWithAnnotationNoHuman.fasta.gz
inst/extdata/fgcz_contaminants_20130115_patchedWithRespectiveUniprot2.fasta.gz
inst/extdata/fgcz_contaminants_20150123.fasta.gz
inst/extdata/uniprot_signal_homo_sapiens_9606_23032016.tab.gz
inst/extdata/uniprot_signal_mus_musculus_29032016.tab.gz
inst/p1000_db1_example/annotation.txt
inst/p1000_db1_example/shortfasta.fasta.gz
inst/p1000_db1_example/uniprot_taxonomy_Oryctolagus_cuniculus.fasta.gz
man/annotateAHO.Rd man/annotatePeptides.Rd man/annotateVec.Rd man/createDecoyDB.Rd man/filterSequences.Rd man/greedy.Rd man/greedyRes2Matrix.Rd man/loadContaminantsFasta.Rd man/loadContaminantsNoHumanFasta.Rd man/loadHomoSapiensSignalPeptides.Rd man/loadMusMusculusSignalPeptides.Rd man/makeID.Rd man/makeIDUnip.Rd man/pepprot.Rd man/prepareMatrix.Rd man/protpepmeta.Rd man/protpepmetashort.Rd man/prozor.Rd man/readPeptideFasta.Rd man/removeSignalPeptide.Rd man/reverseSeq.Rd man/writeFasta.Rd
prozor.Rproj
vignettes/CreatingDecoyDB.Rmd vignettes/specAnnotationMilena.Rmd
vignettes/specAnnotationMilena.html
protViz/prozor documentation built on Feb. 18, 2018, 2:59 p.m.