Files in protViz/prozor
Minimal Protein Set Explaining Peptide Spectrum Matches

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/DeprecatedAnnotatePeptides.R R/annotatePeptides.R R/computeFDR.R R/createDecoyDB.R R/greedy.R R/hello.R R/loadContaminantsFasta.R R/prepareMatrix.R R/readFasta.R R/removeSignalPeptides.R R/reverseSeq.R R/writeFasta.R R/zzz.R README.md
data/fdrSample.tab
data/pepprot.tab
data/protpepmetashort.tab
inst/creatingDBs/CreateDB.Rmd inst/creatingDBs/fixCont.Rmd inst/creatingDBs/specAnnotationMilena.Rmd
inst/extdata/Annotation_allSeq.fasta.gz
inst/extdata/Annotation_canSeq.fasta.gz
inst/extdata/IDResults.txt.gz
inst/extdata/UnimodMappings.txt
inst/extdata/fgcz_ContaminantsWithAnnotation.fasta.gz
inst/extdata/fgcz_ContaminantsWithAnnotationNoHuman.fasta.gz
inst/extdata/fgcz_contaminants_20130115_patchedWithRespectiveUniprot2.fasta.gz
inst/extdata/fgcz_contaminants_20150123.fasta.gz
inst/extdata/shortfasta.fasta.gz
inst/p1000_db1_example/annotation.txt
inst/p1000_db1_example/shortfasta.fasta.gz
inst/p1000_db1_example/uniprot_taxonomy_Oryctolagus_cuniculus.fasta.gz
man/annotateAHO.Rd man/annotatePeptides.Rd man/annotateVec.Rd man/computeFDR.Rd man/computeFDRwithID.Rd man/createDecoyDB.Rd man/fdrSample.Rd man/greedy.Rd man/greedyRes2Matrix.Rd man/loadContaminantsFasta.Rd man/loadContaminantsNoHumanFasta.Rd man/makeID.Rd man/makeIDUnip.Rd man/pepprot.Rd man/plotFDR.Rd man/predictScoreFDR.Rd man/prepareMatrix.Rd man/protpepmetashort.Rd man/prozor.Rd man/readPeptideFasta.Rd man/removeSignalPeptide.Rd man/reverseSeq.Rd man/writeFasta.Rd
prozor.Rproj
vignettes/.gitignore
vignettes/CreatingDecoyDB.Rmd vignettes/PeptideAnnotationwithProzor.Rmd
vignettes/PeptideAnnotationwithProzor_files/figure-html/unnamed-chunk-5-1.png
vignettes/PeptideAnnotationwithProzor_files/figure-html/unnamed-chunk-7-1.png
vignettes/PeptideAnnotationwithProzor_files/figure-html/unnamed-chunk-8-1.png
vignettes/TargetDecoyFDR_Example.Rmd
vignettes/bibliography.bib
protViz/prozor documentation built on Oct. 26, 2018, 3:08 p.m.