annotateVec: annotate vector of petpide sequences against fasta file...

Description Usage Arguments Examples

View source: R/DeprecatedAnnotatePeptides.R

Description

annotate vector of petpide sequences against fasta file (Deprecated)

Usage

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annotateVec(pepseq, fasta, digestPattern = "(([RK])|(^)|(^M))",
  mcCores = NULL)

Arguments

pepseq

peptide sequences

fasta

fasta file

digestPattern

digest pattern as regex

mcCores

nr of cores to use

Examples

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library(prozor)
file = system.file("extdata/shortfasta.fasta.gz",package = "prozor")
fasta = readPeptideFasta(file = file)

res = annotateVec(pepprot[1:20,"peptideSeq"],fasta)
head(res)

protViz/prozor documentation built on Oct. 26, 2018, 3:08 p.m.