psolymos/opticut: Likelihood Based Optimal Partitioning and Indicator Species Analysis

Likelihood based optimal partitioning and indicator species analysis. Finding the best binary partition for each species based on model selection, with the possibility to take into account modifying/confounding variables as described in Kemencei et al. (2014) <doi:10.1556/ComEc.15.2014.2.6>. The package implements binary and multi-level response models, various measures of uncertainty, Lorenz-curve based thresholding, with native support for parallel computations.

Getting started

Package details

AuthorPeter Solymos [cre, aut], Ermias T. Azeria [ctb]
MaintainerPeter Solymos <[email protected]>
LicenseGPL-2
Version0.1-2
URL https://github.com/psolymos/opticut
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("psolymos/opticut")
psolymos/opticut documentation built on April 29, 2018, 10:17 a.m.