add_psm_apexes: Add PSM apexes by each 'RAW_File'.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
add_psm_apexes R Documentation
Add PSM apexes by each RAW_File.
Description
Add PSM apexes by each RAW_File.
Usage
add_psm_apexes(
df = NULL,
trace_file = NULL,
dat_dir = NULL,
path_ms1 = NULL,
cols = c("raw_file", "pep_tot_int", "pep_exp_mz", "pep_seq_mod", "pep_ret_range",
"pep_apex_ret", "pep_scan_num", "pep_orig_scan", "pep_apex_scan", "pep_n_apexes")
)
Arguments
df
A fraction of PSM table, e.g. TMTSet1_LCMSinj1_PSM_N.txt,
under a single RAW_File.
trace_file
A file name of MS1 traces (ms1apexes_[...].rds).
dat_dir
A working directory.
path_ms1
The path to the data of MS1 traces.
cols
Column keys
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| add_psm_apexes | R Documentation |
Add PSM apexes by each RAW_File.
Description
Add PSM apexes by each RAW_File.
Usage
add_psm_apexes(
df = NULL,
trace_file = NULL,
dat_dir = NULL,
path_ms1 = NULL,
cols = c("raw_file", "pep_tot_int", "pep_exp_mz", "pep_seq_mod", "pep_ret_range",
"pep_apex_ret", "pep_scan_num", "pep_orig_scan", "pep_apex_scan", "pep_n_apexes")
)
Arguments
df |
A fraction of PSM table, e.g. |
trace_file |
A file name of MS1 traces ( |
dat_dir |
A working directory. |
path_ms1 |
The path to the data of MS1 traces. |
cols |
Column keys |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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