tests/testthat/test-type-standard.R
In r-lib/depends: Package Dependency Resolution and Downloads
test_that("resolve_remote", {
setup_fake_apps()
cols <- c("package", "version", "needscompilation",
"repodir", "rversion", "platform", "priority", "ref", "type",
"status", "target", "mirror", "sources", "sysreqs", "deps",
"built", "repotype", "direct", "params", "metadata")
conf <- current_config()
cache <- list(
package = NULL,
metadata = pkgcache::get_cranlike_metadata_cache()
)
# CRAN package as standard package --------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("crayon"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
expect_snapshot(
as.list(res[, intersect(names(res), cols)]),
transform = transform_local_port,
variant = paste0("pillar-", packageVersion("pillar"))
)
# Bioc package as standard package --------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("Biobase"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
expect_snapshot(
as.list(res[, intersect(names(res), cols)]),
transform = function(x) transform_local_port(transform_bioc_version(x)),
variant = if (getRversion() < "3.6.0") "old-r" else "new-r"
)
# Proper error for non-existing package ---------------------------------
nonpkg <- "thispackagecannotexistforsure"
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref(nonpkg),
TRUE,
conf,
cache,
dependencies = FALSE
)))
expect_snapshot(
as.list(res[, intersect(names(res), cols)]),
transform = transform_local_port,
variant = paste0("pillar-", packageVersion("pillar"))
)
})
test_that("download_remote", {
setup_fake_apps()
dir.create(tmp <- tempfile())
dir.create(tmp2 <- tempfile())
on.exit(unlink(c(tmp, tmp2), recursive = TRUE), add = TRUE)
conf <- current_config()
conf$platforms <- "source"
conf$cache_dir <- tmp
conf$package_cache_dir <- tmp2
cache <- list(
package = pkgcache::package_cache$new(conf$package_cache_dir),
metadata = pkgcache::get_cranlike_metadata_cache()
)
# CRAN package ----------------------------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("crayon"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
target <- file.path(conf$cache_dir, res$target[1])
tree <- paste0(target, "-t")
dl <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_equal(dl, "Got")
expect_true(file.exists(target))
unlink(target)
# bioc package ----------------------------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("Biobase"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
target <- file.path(conf$cache_dir, res$target[1])
tree <- paste0(target, "-t")
dl <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_equal(dl, "Got")
expect_true(file.exists(target))
unlink(target)
# caching ---------------------------------------------------------------
dl2 <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_true(dl2 %in% c("Had", "Current"))
expect_true(file.exists(target))
})
test_that("download cran-like repos", {
setup_fake_apps()
x_app_pkgs <- dcf("
Package: foobar
Version: 1.0.0
")
fake_cranlike <- webfakes::local_app_process(cran_app(x_app_pkgs))
withr::local_options(
repos = c(X = fake_cranlike$url(), getOption("repos"))
)
dir.create(tmp <- tempfile())
dir.create(tmp2 <- tempfile())
on.exit(unlink(c(tmp, tmp2), recursive = TRUE), add = TRUE)
conf <- current_config()
conf$platforms <- "source"
conf$cache_dir <- tmp
conf$package_cache_dir <- tmp2
cache <- list(
package = pkgcache::package_cache$new(conf$package_cache_dir),
metadata = pkgcache::get_cranlike_metadata_cache()
)
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("foobar"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
target <- file.path(conf$cache_dir, res$target[1])
tree <- paste0(target, "-t")
dl <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_equal(dl, "Got")
expect_true(file.exists(target))
unlink(target)
dl2 <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_true(dl2 %in% c("Had", "Current"))
expect_true(file.exists(target))
})
test_that("satisfy_remote", {
res <- make_fake_resolution(`crayon@>=1.0.0` = list(type = "standard"))
## Package names differ
bad1 <- make_fake_resolution(`crayon2` = list())
expect_false(ans <- satisfy_remote_standard(res, bad1))
expect_match(attr(ans, "reason"), "Package names differ")
## Insufficient version
bad2 <- make_fake_resolution(`crayon` = list(version = "0.0.1"))
expect_false(ans <- satisfy_remote_standard(res, bad2))
expect_match(attr(ans, "reason"), "Insufficient version")
## Version is OK
ok1 <- make_fake_resolution(`local::foobar` = list(package = "crayon"))
expect_true(satisfy_remote_standard(res, ok1))
## No version req
res <- make_fake_resolution(`crayon` = list(type = "standard"))
ok2 <- make_fake_resolution(`local::foobar` = list(
package = "crayon", version = "0.0.1"))
expect_true(satisfy_remote_standard(res, ok2))
## Direct package must be from CRAN(like), must update
res <- make_fake_resolution(`crayon` = list(
type = "standard",
package = "crayon",
direct = TRUE,
version = "1.1.1"
))
bad3 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list(repotype = NA_character_, remotetype = NA_character_))
))
expect_false(satisfy_remote_standard(res, bad3))
bad4 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list())
))
expect_false(satisfy_remote_standard(res, bad4))
bad5 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list(repotype = "cran", remotetype = "standard")),
version = "1.0.0"
))
expect_false(satisfy_remote_standard(res, bad5))
bad6 <- make_fake_resolution(`installed::crayon` = list(
type = "local",
package = "crayon",
extra = list(list(repotype = "cran", remotetype = "standard")),
version = "1.0.0"
))
expect_false(satisfy_remote_standard(res, bad6))
ok3 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list(repotype = "cran", remotetype = "standard")),
version = "1.2.0"
))
expect_true(satisfy_remote_standard(res, ok3))
})
test_that("installedok", {
# CRAN binary
sol <- list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
)
expect_true(installedok_remote_standard(
list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-11-08 08:37:45 UTC; unix"
),
sol
))
# CRAN source
sol <- list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "source"
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repository = "CRAN"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
# Bioc binary
sol <- list(
repotype = "bioc",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
)
expect_true(installedok_remote_standard(
list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-11-08 08:37:45 UTC; unix"
),
sol
))
# Bioc source
sol <- list(
repotype = "bioc",
package = "package",
version = "1.0.0",
platform = "source"
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repotype = "bioc"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
# Other binary
sol <- list(
repotype = NA_character_,
package = "package",
version = "1.0.0",
platform = "*",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix",
metadata = list(list(RemoteRepos = "foobar"))
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repotype = "bioc",
remoterepos = "foobar",
platform = "*",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
# Other source
sol <- list(
repotype = NA_character_,
package = "package",
version = "1.0.0",
platform = "source",
metadata = list(list(RemoteRepos = "foobar"))
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repotype = "bioc",
remoterepos = "foobar"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
})
test_that("installedok Linux binaries", {
solution <- list(
package = "package",
version = "1.0.0",
platform = "x86_64-pc-linux-gnu-ubuntu-22.04"
)
installed <- list(
package = "package",
version = "1.0.0",
platform = "x86_64-pc-linux-gnu",
built = "R 4.3.1; x86_64-pc-linux-gnu; 2023-09-21 14:53:54 UTC; unix"
)
expect_true(installedok_remote_standard(installed, solution))
solution2 <- list(
package = "package",
version = "1.0.0",
platform = "x86_64-pc-linux-gnu-ubuntu-22.04"
)
installed2 <- list(
package = "package",
version = "1.0.0",
remotepkgplatform = "x86_64-pc-linux-gnu-ubuntu-22.04",
platform = "x86_64-pc-linux-gnu"
)
expect_true(installedok_remote_standard(installed2, solution2))
})
r-lib/depends documentation built on April 5, 2024, 3:39 p.m.
R Package Documentation
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test_that("resolve_remote", {
setup_fake_apps()
cols <- c("package", "version", "needscompilation",
"repodir", "rversion", "platform", "priority", "ref", "type",
"status", "target", "mirror", "sources", "sysreqs", "deps",
"built", "repotype", "direct", "params", "metadata")
conf <- current_config()
cache <- list(
package = NULL,
metadata = pkgcache::get_cranlike_metadata_cache()
)
# CRAN package as standard package --------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("crayon"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
expect_snapshot(
as.list(res[, intersect(names(res), cols)]),
transform = transform_local_port,
variant = paste0("pillar-", packageVersion("pillar"))
)
# Bioc package as standard package --------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("Biobase"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
expect_snapshot(
as.list(res[, intersect(names(res), cols)]),
transform = function(x) transform_local_port(transform_bioc_version(x)),
variant = if (getRversion() < "3.6.0") "old-r" else "new-r"
)
# Proper error for non-existing package ---------------------------------
nonpkg <- "thispackagecannotexistforsure"
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref(nonpkg),
TRUE,
conf,
cache,
dependencies = FALSE
)))
expect_snapshot(
as.list(res[, intersect(names(res), cols)]),
transform = transform_local_port,
variant = paste0("pillar-", packageVersion("pillar"))
)
})
test_that("download_remote", {
setup_fake_apps()
dir.create(tmp <- tempfile())
dir.create(tmp2 <- tempfile())
on.exit(unlink(c(tmp, tmp2), recursive = TRUE), add = TRUE)
conf <- current_config()
conf$platforms <- "source"
conf$cache_dir <- tmp
conf$package_cache_dir <- tmp2
cache <- list(
package = pkgcache::package_cache$new(conf$package_cache_dir),
metadata = pkgcache::get_cranlike_metadata_cache()
)
# CRAN package ----------------------------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("crayon"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
target <- file.path(conf$cache_dir, res$target[1])
tree <- paste0(target, "-t")
dl <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_equal(dl, "Got")
expect_true(file.exists(target))
unlink(target)
# bioc package ----------------------------------------------------------
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("Biobase"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
target <- file.path(conf$cache_dir, res$target[1])
tree <- paste0(target, "-t")
dl <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_equal(dl, "Got")
expect_true(file.exists(target))
unlink(target)
# caching ---------------------------------------------------------------
dl2 <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_true(dl2 %in% c("Had", "Current"))
expect_true(file.exists(target))
})
test_that("download cran-like repos", {
setup_fake_apps()
x_app_pkgs <- dcf("
Package: foobar
Version: 1.0.0
")
fake_cranlike <- webfakes::local_app_process(cran_app(x_app_pkgs))
withr::local_options(
repos = c(X = fake_cranlike$url(), getOption("repos"))
)
dir.create(tmp <- tempfile())
dir.create(tmp2 <- tempfile())
on.exit(unlink(c(tmp, tmp2), recursive = TRUE), add = TRUE)
conf <- current_config()
conf$platforms <- "source"
conf$cache_dir <- tmp
conf$package_cache_dir <- tmp2
cache <- list(
package = pkgcache::package_cache$new(conf$package_cache_dir),
metadata = pkgcache::get_cranlike_metadata_cache()
)
res <- suppressMessages(synchronise(resolve_remote_standard(
parse_pkg_ref("foobar"),
TRUE,
conf,
cache,
dependencies = FALSE
)))
target <- file.path(conf$cache_dir, res$target[1])
tree <- paste0(target, "-t")
dl <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_equal(dl, "Got")
expect_true(file.exists(target))
unlink(target)
dl2 <- synchronise(download_remote_standard(
res[1,],
target,
tree,
conf,
cache,
on_progress = NULL
))
expect_true(dl2 %in% c("Had", "Current"))
expect_true(file.exists(target))
})
test_that("satisfy_remote", {
res <- make_fake_resolution(`crayon@>=1.0.0` = list(type = "standard"))
## Package names differ
bad1 <- make_fake_resolution(`crayon2` = list())
expect_false(ans <- satisfy_remote_standard(res, bad1))
expect_match(attr(ans, "reason"), "Package names differ")
## Insufficient version
bad2 <- make_fake_resolution(`crayon` = list(version = "0.0.1"))
expect_false(ans <- satisfy_remote_standard(res, bad2))
expect_match(attr(ans, "reason"), "Insufficient version")
## Version is OK
ok1 <- make_fake_resolution(`local::foobar` = list(package = "crayon"))
expect_true(satisfy_remote_standard(res, ok1))
## No version req
res <- make_fake_resolution(`crayon` = list(type = "standard"))
ok2 <- make_fake_resolution(`local::foobar` = list(
package = "crayon", version = "0.0.1"))
expect_true(satisfy_remote_standard(res, ok2))
## Direct package must be from CRAN(like), must update
res <- make_fake_resolution(`crayon` = list(
type = "standard",
package = "crayon",
direct = TRUE,
version = "1.1.1"
))
bad3 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list(repotype = NA_character_, remotetype = NA_character_))
))
expect_false(satisfy_remote_standard(res, bad3))
bad4 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list())
))
expect_false(satisfy_remote_standard(res, bad4))
bad5 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list(repotype = "cran", remotetype = "standard")),
version = "1.0.0"
))
expect_false(satisfy_remote_standard(res, bad5))
bad6 <- make_fake_resolution(`installed::crayon` = list(
type = "local",
package = "crayon",
extra = list(list(repotype = "cran", remotetype = "standard")),
version = "1.0.0"
))
expect_false(satisfy_remote_standard(res, bad6))
ok3 <- make_fake_resolution(`installed::crayon` = list(
type = "installed",
package = "crayon",
extra = list(list(repotype = "cran", remotetype = "standard")),
version = "1.2.0"
))
expect_true(satisfy_remote_standard(res, ok3))
})
test_that("installedok", {
# CRAN binary
sol <- list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
)
expect_true(installedok_remote_standard(
list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-11-08 08:37:45 UTC; unix"
),
sol
))
# CRAN source
sol <- list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "source"
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repository = "CRAN"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
# Bioc binary
sol <- list(
repotype = "bioc",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
)
expect_true(installedok_remote_standard(
list(
repotype = "cran",
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
platform = "aarch64-apple-darwin20",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-11-08 08:37:45 UTC; unix"
),
sol
))
# Bioc source
sol <- list(
repotype = "bioc",
package = "package",
version = "1.0.0",
platform = "source"
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repotype = "bioc"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
# Other binary
sol <- list(
repotype = NA_character_,
package = "package",
version = "1.0.0",
platform = "*",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix",
metadata = list(list(RemoteRepos = "foobar"))
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repotype = "bioc",
remoterepos = "foobar",
platform = "*",
built = "R 4.2.0; aarch64-apple-darwin20; 2022-10-08 08:37:45 UTC; unix"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
# Other source
sol <- list(
repotype = NA_character_,
package = "package",
version = "1.0.0",
platform = "source",
metadata = list(list(RemoteRepos = "foobar"))
)
expect_true(installedok_remote_standard(
list(
package = "package",
version = "1.0.0",
repotype = "bioc",
remoterepos = "foobar"
),
sol
))
expect_false(installedok_remote_standard(
list(
package = "package",
version = "1.0.0"
),
sol
))
})
test_that("installedok Linux binaries", {
solution <- list(
package = "package",
version = "1.0.0",
platform = "x86_64-pc-linux-gnu-ubuntu-22.04"
)
installed <- list(
package = "package",
version = "1.0.0",
platform = "x86_64-pc-linux-gnu",
built = "R 4.3.1; x86_64-pc-linux-gnu; 2023-09-21 14:53:54 UTC; unix"
)
expect_true(installedok_remote_standard(installed, solution))
solution2 <- list(
package = "package",
version = "1.0.0",
platform = "x86_64-pc-linux-gnu-ubuntu-22.04"
)
installed2 <- list(
package = "package",
version = "1.0.0",
remotepkgplatform = "x86_64-pc-linux-gnu-ubuntu-22.04",
platform = "x86_64-pc-linux-gnu"
)
expect_true(installedok_remote_standard(installed2, solution2))
})
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