#' SSutils
#'
#' The SSutils package provides additional utilities for working with
#' Stock Synthesis that are not found in the r4ss package.
#'
#' @section SSutils functions:
#' \itemize{
#' \item \code{\link{copy_SS_inputs}}: a function to copy inputs from
#' a single model into a new folder
#' \item \code{\link{populate_multiple_folders}}: run copy_SS_inputs
#' over for a set of folders
#' \item \code{\link{run_SS_models}}: run SS on each directory
#' \item \code{\link{run_SS_models_parallel}}: run SS on each directory in
#' parallel using future and furrr (experimental)
#' }
#' @author Ian G. Taylor
#' @import r4ss
#' @docType package
#' @name SSutils
#'
#' @examples
#' \dontrun{
#' devtools::install_github('r4ss/SSutils')
#'
#' # copy model files to a bunch of new directories and
#' # copy a new executable into each one
#' outerdir.old <- 'c:/SS/modeltesting/Version_3.30.12.00_June22'
#' outerdir.new <- 'c:/SS/modeltesting/Version_3.30.13_beta_Dec18'
#' dir.info <- populate_multiple_folders(
#' outerdir.old = outerdir.old,
#' outerdir.new = outerdir.new,
#' exe.dir = 'c:/SS/SSv3.30.13_beta_Dec18', overwrite=FALSE)
#'
#' # run the models in each directory
#' run_SS_models(dirvec = dir(outerdir.new, full.names=TRUE))
#'
#' # read output
#' mods.dir <- dir(outerdir.new, full.names=TRUE)
#' mods.out <- SSgetoutput(dirvec=mods.dir)
#'
#' # run plotting functions
#' for(imod in 1:length(mods.out)){
#' print(imod)
#' print(mods.dir[imod])
#' graphics.off()
#' SS_plots(mods.out[[imod]])
#' }
#'
#' # check for successful completion of plots
#' for(imod in 1:length(mods.dir)){
#' print(imod)
#' print(mods.dir[imod])
#' print(file.info(file.path(mods.dir[imod], "plots/SS_output.html"))$size)
#' }
#' }
#'
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