Segmentation of Clustered Sequences

ash | asinh data transformation |

backtrace | Back-tracing step of the 'segmenTier' algorithm. |

calculateScore | dynamic programming routine |

clusterCor_c | Calculates data-cluster similarity. |

clusterMaxCor_c | Reports the maximally correlating cluster for each data... |

clusterTimeseries | Cluster a processed time-series with k-means. |

colorClusters | Assign colors to clusters. |

flowclusterTimeseries | Cluster a processed time-series with 'flowClust' &... |

log_1 | log trafo handling zeros by adding 1 |

logLik.kmeans | AIC/BIC for kmeans |

myPearson | Pearson product-moment correlation coefficient |

plot.clustering | Plot method for the "clustering" object. |

plotdev | Switch between plot devices. |

plotSegmentation | Summary plot for the 'segmenTier' pipeline. |

plot.segments | Plot method for the "segments" object. |

plot.timeseries | Plot method for the "timeseries" object. |

processTimeseries | Process a time-series for 'segmenTier'. |

segmentCluster.batch | Batch wrapper for 'segmentClusters'. |

segmentClusters | Run the 'segmenTier' algorithm. |

segmenTier | segmenTier : cluster-based segmentation from a sequential... |

setVarySettings | Parameters for 'segmentCluster.batch'. |

sortClusters | Sort clusters by similarity. |

tsd | Transcriptome time-series from budding yeast. |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.