Files in raim/segmenTools
Tools for Functional Genome Exploration
DESCRIPTION
NAMESPACE
R/clusterTools.R
R/coor2index.R
R/osciTools.R
R/parsers.R
R/plotUtils.R
R/segmenTools.R
R/seqTools.R
R/utils.R
README.md
inst/bash/segmentoverlaps.sh
inst/bash/segmentoverlaps_symmetric.sh
man/add_alphas.Rd
man/alignData.Rd
man/annotateTarget.Rd
man/annotationOverlap.Rd
man/ash.Rd
man/bed2coor.Rd
man/calculatePhase.Rd
man/ci95.Rd
man/circ.dens.Rd
man/clusterAnnotation.Rd
man/clusterAverages.Rd
man/clusterCluster.Rd
man/clusterColors.Rd
man/clusterFlow.Rd
man/clusterProfile.Rd
man/clusterTimeseries2.Rd
man/collapsePositions.Rd
man/collectOvlStats.Rd
man/complex2degree.Rd
man/coor2bed.Rd
man/coor2index.Rd
man/degree2complex.Rd
man/dense2d.Rd
man/expandCircularFeatures.Rd
man/figlabel.Rd
man/fillGenome.Rd
man/findAACodon.Rd
man/getChrSum.Rd
man/getOverlapStats.Rd
man/getSegmentClassTable.Rd
man/getSegmentClasses.Rd
man/get_fft.Rd
man/gff2tab.Rd
man/idx2chr.Rd
man/idx2coor.Rd
man/idx2str.Rd
man/image_matrix.Rd
man/index2coor.Rd
man/insertRows.Rd
man/jrplot.Rd
man/lg2r.Rd
man/list2df.Rd
man/log_1.Rd
man/ma.Rd
man/meanzero.Rd
man/mergeCluster.Rd
man/mutatePositions.Rd
man/normalize.los.Rd
man/num2col.Rd
man/parseAnnotation.Rd
man/parseAnnotationList.Rd
man/parseGEOSoft.Rd
man/parseJaccard.Rd
man/phaseDist.Rd
man/plot.clusteraverages.Rd
man/plotBIC.Rd
man/plotClusterLegend.Rd
man/plotClusters.Rd
man/plotCor.Rd
man/plotDFT.Rd
man/plotOverlaps.Rd
man/plotOverlapsLegend.Rd
man/plotSingles.Rd
man/plot_cdfLst.Rd
man/plotdev.Rd
man/presegment.Rd
man/pvalDist.Rd
man/randomSegments.Rd
man/range2nt.Rd
man/reCluster.Rd
man/readDist.Rd
man/readFASTA.Rd
man/relabelClusters.Rd
man/removeCircularFeatures.Rd
man/revcomp.Rd
man/runGost.Rd
man/segmenTools.Rd
man/segmentAnnotate.Rd
man/segmentAverage.Rd
man/segmentMerge.Rd
man/segmentOverlaps.Rd
man/segmentOverlaps_bed.Rd
man/segmentPrune.Rd
man/segmentSort.Rd
man/segmentUpstream.Rd
man/selectColors.Rd
man/selected.Rd
man/seq2nt.Rd
man/shadowtext.Rd
man/sortOverlaps.Rd
man/splitsegs.Rd
man/summarizeGEOSoft.Rd
man/switchStrand.Rd
man/t.clusterOverlaps.Rd
man/tab2gff.Rd
man/tagDuplicates.Rd
man/testPhase.Rd
man/val2col.Rd
man/whichSegment.Rd
man/writeSegments.Rd
scripts/cleanCircular.R
scripts/csv2rdata.R
scripts/example_selectColors.R
scripts/expandBed.R
scripts/genomeOscillation.R
scripts/genomeSpectra.R
scripts/grepGene.sh
scripts/mergegenomedata.pl
scripts/pbs_batch.sh
scripts/presegment.R
scripts/runSegmentier.R
scripts/segmentAnnotate.R
scripts/segmentDynamics.R
scripts/segmentLengths.R
scripts/segmentOverlaps.R
scripts/segmentRecovery.R
scripts/segmentTiming.R
scripts/segment_batch.sh
