R/datasets.r

#' \code{tissue_small} contains a subset of tissue panel samples corresponding
#'  to adipose tissue and lower part of the brainstem \emph{medulla oblongata}.
#'  To make the data size manageable, this dataset contains only the data from
#'  17 and 18 cromosome. The data is generated using Illumina 450K platform.
#'  
#' The \code{tissue_small} dataset is a list with 3 slots
#' \enumerate{ 
#' 	\item \code{values} - beta value matrix;
#' 	\item \code{genome_information} - the probe annotations in the required GRanges format;
#' 	\item \code{annotation} - a vector with sample annotations.
#' }
#' 
#' \code{artificial} is a very small generated example to test the basic 
#' functionality of seqlm. It is also a list and contains same also 
#' \code{values} and \code{genome_information} slots but instead of 
#' \code{annotation} slot there are two different vectors \code{annotation1} 
#' and \code{annotation2}.
#' 
#' @name tissue_small 
#' 
#' @author  Raivo Kolde <rkolde@@gmail.com>
#' 
#' @references Lukk M, Kapushesky M, Nikkila J, Parkinson H, Goncalves A, Huber W, 
#' Ukkonen E, Brazma A. "A global map of human gene expression." Nat Biotechnology. 2010 
#' Apr;28(4):322-4.
#' 
#' @aliases artificial
#' 
#' @keywords data
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raivokolde/seqlm documentation built on May 26, 2019, 9:59 p.m.