API for rcastelo/GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq Data
| Global functions | |
|---|---|
| .catObj | Source code |
| .computeGeneSetsOverlap | Source code |
| .fastRndWalk | Source code |
| .fastRndWalk2 | Source code |
| .filterAndMapGenesAndGeneSets | Source code |
| .filterGenes | Source code |
| .geneSets | Source code |
| .geneSetsIndices2Names | Source code |
| .gsvaDelayedArray | Source code |
| .guessIfCountData | Source code |
| .isAnnoPkgInstalled | Source code |
| .isAnnoPkgValid | Source code |
| .isCharLength1 | Source code |
| .isCharNonEmpty | Source code |
| .isPackageLoaded | Source code |
| .mapGeneSetsToFeatures | Source code |
| .matrix2dgCMatrix | Source code |
| .objPkgClass | Source code |
| .onLoad | Source code |
| .rndWalk | Source code |
| .showSome | Source code |
| .sparse2columnList | Source code |
| .sparseColumnApplyAndReplace | Source code |
| .sparseScaleMessage | Source code |
| GSVA-pkg-defunct | Man page |
| GSVA-pkg-deprecated | Man page |
| GsvaExprData | Man page |
| GsvaExprData-class | Man page |
| GsvaGeneSets-class | Man page |
| GsvaMethodParam-class | Man page |
| combinez | Source code |
| combinezDelayed | Source code |
| compute.gene.density | Source code |
| compute.geneset.es | Source code |
| compute.gset.overlap.score | Source code |
| compute.null.enrichment | Source code |
| computeGeneSetsOverlap | Man page |
| computeGeneSetsOverlap,GeneSetCollection,ExpressionSet-method | Man page |
| computeGeneSetsOverlap,GeneSetCollection,character-method | Man page |
| computeGeneSetsOverlap,list,ExpressionSet-method | Man page |
| computeGeneSetsOverlap,list,character-method | Man page |
| do_normalize | Source code |
| filterGeneSets | Man page |
| filterGeneSets,GeneSetCollection-method | Man page |
| filterGeneSets,list-method | Man page |
| geneSetSizes | Man page |
| geneSetSizes,GsvaExprData-method | Man page |
| geneSetSizes,GsvaMethodParam-method | Man page |
| geneSets | Man page |
| geneSets,GsvaExprData-method | Man page |
| geneSets,GsvaMethodParam-method | Man page |
| geneSets,SingleCellExperiment-method | Man page |
| geneSets,SpatialExperiment-method | Man page |
| geneSets,SummarizedExperiment-method | Man page |
| get_absRanking | Source code |
| get_alpha | Source code |
| get_kcdf | Source code |
| get_maxDiff | Source code |
| get_tau | Source code |
| gsva | Man page |
| gsva,ExpressionSet-method | Man page |
| gsva,SingleCellExperiment-method | Man page |
| gsva,SummarizedExperiment-method | Man page |
| gsva,dgCMatrix-method | Man page |
| gsva,gsvaParam-method | Man page |
| gsva,matrix-method | Man page |
| gsva,missing-method | Man page |
| gsva,plageParam-method | Man page |
| gsva,ssgseaParam-method | Man page |
| gsva,zscoreParam-method | Man page |
| gsva-defunct | Man page |
| gsvaParam | Man page Source code |
| gsvaParam-class | Man page |
| h5BackendRealization | Source code |
| igsva | Man page Source code |
| ks_test_Rcode | Source code |
| ks_test_m | Source code |
| load.gmt.data | Source code |
| plage | Source code |
| plageDelayed | Source code |
| plageParam | Man page Source code |
| plageParam-class | Man page |
| rankHDF5 | Source code |
| rightsingularsvdvectorgset | Source code |
| rightsvdDelayed | Source code |
| ssgsea | Source code |
| ssgseaDelayed | Source code |
| ssgseaParam | Man page Source code |
| ssgseaParam-class | Man page |
| zscore | Source code |
| zscoreDelayed | Source code |
| zscoreParam | Man page Source code |
| zscoreParam-class | Man page |
