Files in rcavalcante/annotatr
Annotation of Genomic Regions to Genomic Annotations

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/annotatr_data_doc.R R/annotatr_package_doc.R R/build_annotations.R R/intersect.R R/randomize.R R/read.R R/summarize.R R/utils.R R/visualize.R README.md data-raw/create_example_annotations.R
data/annotations.rda
inst/CITATION
inst/NEWS
inst/extdata/Gm12878_Ezh2_peak_annotations.txt.gz
inst/extdata/Gm12878_Ezh2_sorted_scores.narrowPeak.gz
inst/extdata/Gm12878_Stat3_chr2.bed.gz
inst/extdata/IDH2mut_v_NBM_multi_data_chr9.txt.gz
inst/extdata/K562_Cjun_peak_annotations.txt.gz
inst/extdata/test_BED3.bed
inst/extdata/test_BED4.bed
inst/extdata/test_BED5.bed
inst/extdata/test_BED6.bed
inst/extdata/test_annotation_nooverlap.bed
inst/extdata/test_annotations_3.bed
inst/extdata/test_annotations_4.bed
inst/extdata/test_annotations_5.bed
inst/extdata/test_annotations_6.bed
inst/extdata/test_annotations_6_gene.bed
inst/extdata/test_annotations_6_symbol.bed
inst/extdata/test_annotations_6_tx_gene_symbol.bed
inst/extdata/test_annotations_minoverlap.bed
inst/extdata/test_bedGraph.bedGraph
inst/extdata/test_intersect.bed
inst/extdata/test_read_multiple_data_nohead.bed
man/annotate_regions.Rd man/annotations.Rd man/annotatr.Rd man/annotatr_cache.Rd man/build_ah_annots.Rd man/build_annotations.Rd man/build_cpg_annots.Rd man/build_enhancer_annots.Rd man/build_gene_annots.Rd man/build_hmm_annots.Rd man/build_lncrna_annots.Rd man/builtin_annotations.Rd man/builtin_genomes.Rd man/check_annotations.Rd man/expand_annotations.Rd man/get_cellline_from_code.Rd man/get_cellline_from_shortcut.Rd man/get_orgdb_name.Rd man/get_txdb_name.Rd man/plot_annotation.Rd man/plot_categorical.Rd man/plot_coannotations.Rd man/plot_numerical.Rd man/plot_numerical_coannotations.Rd man/randomize_regions.Rd man/read_annotations.Rd man/read_regions.Rd man/reformat_hmm_codes.Rd man/subset_order_tbl.Rd man/summarize_annotations.Rd man/summarize_categorical.Rd man/summarize_numerical.Rd man/tidy_annotations.Rd tests/testthat.R tests/testthat/test_1_utils.R tests/testthat/test_2_read.R tests/testthat/test_3_build_annotations.R tests/testthat/test_4_intersect.R tests/testthat/test_5_randomize.R tests/testthat/test_6_summarize.R tests/testthat/test_7_visualize.R vignettes/annotatr-vignette.Rmd
vignettes/annotatr_cpgs.jpeg
vignettes/annotatr_genes.jpeg
rcavalcante/annotatr documentation built on Jan. 21, 2018, 8:55 p.m.