get.mutect2.annotated.header <- function() {
header <- c(
'annovar_chr',
'annovar_start',
'annovar_end',
'annovar_ref',
'annovar_alt',
'annovar_func',
'annovar_gene',
'annovar_exonic_func',
'annovar_annotation',
'annovar_ens_func',
'annovar_ens_gene',
'annovar_ens_exonic_func',
'annovar_ens_annotation',
'annovar_dbsnp',
'annovar_1000g',
'annovar_esp',
'annovar_complete_genomics',
'annovar_cosmic',
'annovar_clinvar',
'annovar_exac',
'annovar_target',
'normal_name',
'tumour_name',
'gatk_filter',
'gatk_normal_lod',
'gatk_tumour_lod',
'gatk_normal_genotype',
'gatk_normal_ref_count',
'gatk_normal_alt_count',
'gatk_normal_depth',
'gatk_normal_allele_fraction',
'gatk_tumour_genotype',
'gatk_tumour_ref_count',
'gatk_tumour_alt_count',
'gatk_tumour_depth',
'gatk_tumour_allele_fraction',
'gatk_variant_length',
'gatk_mutation_type'
)
return(header)
}
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