NEWS.md

In reconhub/earlyR: Estimation of Transmissibility in the Early Stages of a Disease Outbreak

earlyR 0.0.4

New features

• graphs are now using ggplot2

earlyR 0.0.3

Bug fixes

• fix issue #11 where the likelihood surface was incorrectly calculated. This unfortunately reverts the issue from #4

earlyR 0.0.2

New features

• heat colors in the plot of lambdas have been replaced by a constant color

Bug fixes

• fixed issue 4 relating to low log-likelihood values which resulted in constant zeros when reverted back to the likelihood scale

earlyR 0.0.1

The main features of the package include:

• get_R: a function to estimate R as well as the force of infection over time, from incidence data; output is an object of class earlyR

• sample_R: a function to obtain a sample of likely R values

• plot: a function to visualise earlyR objects (R or force of infection).

• points: a function using earlyR objects to add the force of infection to an existing plot.

reconhub/earlyR documentation built on Oct. 28, 2020, 3:28 p.m.