Man pages for rhondabacher/methylscaper
Visualization of Methylation Data
| check_package | Check if a package is installed |
| forceReverse | Force reversal of a subset of the ordering |
| human_bm | Human gene symbols and positions |
| initialOrder | Ordering the molecules/reads |
| methyl_average_status | Calculate the average methylation/accessibility status across... |
| methyl_percent_sites | Calculates the percentage of methylated cells/molecules per... |
| methyl_proportion | Calculate the proportion of methylated bases for each... |
| methylscaper | methylscaper |
| mouse_bm | Mouse gene symbols and positions |
| plotSequence | Generate Sequence Plot |
| prepSC | Process single-cell data |
| reads_sm | Example reads from single-molecule experiment |
| refineFunction | Refinement |
| reformatSCE | This is an internal function for now and a place-holder in... |
| ref_seq | Example reference sequence to align reads to from a... |
| runAlign | Align the single-molecule data |
| singlecell_subset | Example preprocessed single-cell experiment subset |
| singlemolecule_example | Example preprocessed single-molecule experiment |
| subsetSC | Load in methylation data |
