API for richelbilderbeek/beastier
Call 'BEAST2'

Global functions
are_beast2_input_lines Man page Source code
are_beast2_input_lines_deep Man page Source code
are_beast2_input_lines_fast Man page Source code
are_identical_alignments Man page Source code
beast2_internal_filenames_to_table Man page Source code
beast2_options_to_table Man page Source code
beastier Man page
beastier-package Man page
check_beast2 Man page Source code
check_beast2_internal_filenames Man page Source code
check_beast2_internal_filenames_data_types Source code
check_beast2_internal_filenames_filenames_differ Source code
check_beast2_internal_filenames_names Source code
check_beast2_options Man page Source code
check_beast2_options_data_types Source code
check_beast2_options_do_not_overwrite_existing_files Source code
check_beast2_options_filenames_differ Source code
check_beast2_options_names Source code
check_beast2_optionses Man page Source code
check_beast2_path Man page Source code
check_can_create_file Man page Source code
check_input_filename Man page Source code
check_input_filename_validity Source code
check_n_threads Man page Source code
check_os Man page Source code
check_rng_seed Man page Source code
create_beast2_internal_filenames Man page Source code
create_beast2_options Man page Source code
create_beast2_run_cmd Man page Source code
create_beast2_validate_cmd Man page Source code
create_beast2_validate_cmd_bin Man page Source code
create_beast2_validate_cmd_jar Man page Source code
create_beast2_version_cmd Man page Source code
create_beast2_version_cmd_bin Man page Source code
create_beast2_version_cmd_jar Man page Source code
create_random_alignment Source code
create_random_fasta Source code
create_random_phylogeny Source code
create_temp_input_filename Man page Source code
create_temp_output_state_filename Man page Source code
default_params_doc Man page Source code
do_minimal_run Man page Source code
get_alignment_ids_from_xml_filename Man page Source code
get_beast2_example_filename Man page Source code
get_beast2_example_filenames Man page Source code
get_beast2_main_class_name Man page Source code
get_beast2_options_filenames Man page Source code
get_beast2_version Man page Source code
get_beastier_path Man page Source code
get_beastier_paths Man page Source code
get_default_beast2_bin_path Man page Source code
get_default_beast2_download_url Man page Source code
get_default_beast2_download_url_linux Man page Source code
get_default_beast2_download_url_win Man page Source code
get_default_beast2_folder Man page Source code
get_default_beast2_jar_path Man page Source code
get_default_beast2_path Man page Source code
get_default_java_path Man page Source code
get_duplicate_param_ids Man page Source code
get_java_version Man page Source code
get_trees_filenames Man page Source code
gives_beast2_warning Man page Source code
has_unique_ids Man page Source code
install_beast2 Man page Source code
is_alignment Man page Source code
is_beast2_input_file Man page Source code
is_beast2_installed Man page Source code
is_bin_path Man page Source code
is_jar_path Man page Source code
is_on_appveyor Man page Source code
is_on_ci Man page Source code
is_on_travis Man page Source code
is_win_bin_path Source code
print_beast2_internal_filenames Man page Source code
print_beast2_options Man page Source code
remove_file_if_present Man page Source code
run_beast2 Man page Source code
run_beast2_from_options Man page Source code
save_lines Man page Source code
uninstall_beast2 Man page Source code
update_beastier Man page Source code
upgrade_beast2 Man page Source code
richelbilderbeek/beastier documentation built on Nov. 6, 2019, 10:24 a.m.