babette: babette: A package for Bayesian phylogenetics.

Description See Also Examples

Description

'babette' provides for an alternative workflow of using the popular phylogenetics tool 'BEAST2', including it peripheral tools. From an alignment and inference model, a posterior of jointly estimated phylogenies and parameter estimates is generated.

See Also

Use bbt_self_test to do verify babette is installed correctly.

These are packages associated with 'babette':

Examples

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if (is_beast2_installed()) {

  inference_model <- create_test_inference_model()
  beast2_options <- create_beast2_options()

  bbt_run_from_model(
    fasta_filename = get_babette_path("anthus_aco.fas"),
    inference_model = inference_model,
    beast2_options = beast2_options
  )

  # Clean up temporary files created by babette
  bbt_delete_temp_files(
    inference_model = inference_model,
    beast2_options = beast2_options
  )
}

richelbilderbeek/rbeast2 documentation built on Aug. 30, 2020, 8:21 a.m.