Files in richelbilderbeek/tracerer
tracerer: Tracer from R

.Rbuildignore
.gitignore
.lintr
.travis.yml
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/calc_act.R R/calc_ess.R R/calc_esses.R R/calc_geom_mean.R R/calc_hpd_interval.R R/calc_mode.R R/calc_stderr_mean.R R/calc_summary_stats.R R/cs_std_dev.R R/extract_operators_lines.R R/files_exist.R R/get_path.R R/get_paths.R R/is_posterior.R R/is_trees_posterior.R R/parse_beast_log.R R/parse_beast_output_files.R R/parse_beast_posterior.R R/parse_beast_state.R R/parse_beast_trees.R R/remove_burn_in.R R/remove_burn_ins.R R/tracerer.R README.md
appveyor.yml
check_dead_links
code_of_conduct.md faq.md
inst/CITATION
inst/WORDLIST
inst/extdata/anthus_2_4.log
inst/extdata/anthus_2_4.state
inst/extdata/anthus_2_4.xml
inst/extdata/anthus_2_4_a.trees
inst/extdata/anthus_2_4_b.trees
inst/extdata/anthus_aco.fas
inst/extdata/anthus_nd2.fas
inst/extdata/beast2_example_output.log
inst/extdata/beast2_example_output.trees
inst/extdata/beast2_example_output.xml
inst/extdata/beast2_example_output.xml.state
inst/extdata/unplottable_anthus_aco.trees
install_beast2
man/calc_act.Rd man/calc_act_cpp.Rd man/calc_act_r.Rd man/calc_ess.Rd man/calc_esses.Rd man/calc_hpd_interval.Rd man/calc_std_error_of_mean_cpp.Rd man/calc_stderr_mean.Rd man/calc_summary_stats.Rd man/calc_summary_stats_trace.Rd man/calc_summary_stats_traces.Rd man/cs_std_dev.Rd man/extract_operators_lines.Rd man/get_tracerer_path.Rd man/get_tracerer_paths.Rd man/is_posterior.Rd man/is_trees_posterior.Rd man/parse_beast_log.Rd man/parse_beast_output_files.Rd man/parse_beast_posterior.Rd man/parse_beast_state_operators.Rd man/parse_beast_trees.Rd man/remove_burn_in.Rd man/remove_burn_ins.Rd man/tracerer.Rd
pics/AppVeyor.png
pics/Codecov.png
pics/README.md
pics/TravisCI.png
pics/ant.png
pics/ant_mono_background.png
pics/ant_mono_background_2.png
pics/distr_2.png
pics/distr_3.png
pics/distr_4.png
pics/distr_5.png
pics/distr_6.png
pics/distr_7.png
pics/distr_8.png
pics/est_2.png
pics/est_3.png
pics/est_4.png
pics/est_5.png
pics/est_6.png
pics/est_7.png
pics/est_8.png
pics/r_logo.png
pics/trace_2.png
pics/trace_3.png
pics/trace_4.png
pics/trace_5.png
pics/trace_6.png
pics/trace_7.png
pics/trace_8.png
pics/tracer.png
pics/tracerer_logo.png
pics/tracerer_logo_1_4.png
pics/tracerer_logo_thin.png
src/.gitignore
src/RcppExports.cpp
src/calc_act_cpp.cpp
src/calc_act_cpp.h
src/calc_std_error_of_mean_cpp.cpp
src/calc_std_error_of_mean_cpp.h
tests/spelling.R tests/testthat.R tests/testthat/test-calc_act.R tests/testthat/test-calc_act_cpp.R tests/testthat/test-calc_act_r.R tests/testthat/test-calc_ess.R tests/testthat/test-calc_esses.R tests/testthat/test-calc_geom_mean.R tests/testthat/test-calc_hpd_interval.R tests/testthat/test-calc_mode.R tests/testthat/test-calc_std_error_of_mean_cpp.R tests/testthat/test-calc_stderr_mean.R tests/testthat/test-calc_summary_stats.R tests/testthat/test-cs_std_dev.R tests/testthat/test-extract_operators_lines.R tests/testthat/test-get_path.R tests/testthat/test-get_paths.R tests/testthat/test-is_posterior.R tests/testthat/test-is_trees_posterior.R tests/testthat/test-parse_beast_log.R tests/testthat/test-parse_beast_output_files.R tests/testthat/test-parse_beast_posterior.R tests/testthat/test-parse_beast_state_operators.R tests/testthat/test-parse_beast_trees.R tests/testthat/test-remove_burn_in.R tests/testthat/test-remove_burn_ins.R
tracerer.Rproj
vignettes/demo.R vignettes/demo.Rmd
vignettes/demo.html
vignettes/demo_estimate_effective_sample_size.R vignettes/demo_estimate_effective_sample_size.Rmd
vignettes/demo_estimate_effective_sample_size.html
vignettes/densitree_example_output.png
vignettes/profile_calc_act.R vignettes/profile_calc_act.Rmd
vignettes/profile_calc_act.html
vignettes/profile_calc_esses.R vignettes/profile_calc_esses.Rmd
vignettes/profile_calc_esses.html
vignettes/read_beast2_trees.R vignettes/read_beast2_trees.Rmd
vignettes/read_beast2_trees.html
vignettes/tracer_distr_posterior.png
vignettes/tracer_example_output.png
vignettes/tracer_trace_posterior.png
richelbilderbeek/tracerer documentation built on Sept. 23, 2018, 6:30 p.m.