Files in richelbilderbeek/tracerer

Tracer from R

.Rbuildignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/custom.md .github/ISSUE_TEMPLATE/feature_request.md .github/pull_request_template.md

.github/workflows/R-CMD-check.yaml

.github/workflows/check_links.yaml

.gitignore

.travis.yml

CONTRIBUTING.md

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/RcppExports.R R/calc_act.R R/calc_ess.R R/calc_esses.R R/calc_geom_mean.R R/calc_hpd_interval.R R/calc_mode.R R/calc_stderr_mean.R R/calc_summary_stats.R R/check_trace.R R/count_trees_in_file.R R/cs_std_dev.R R/default_params_doc.R R/extract_operators_lines.R R/get_path.R R/get_paths.R R/get_tracerer_tempfilename.R R/is_posterior.R R/is_trees_file.R R/is_trees_posterior.R R/parse_beast_log.R R/parse_beast_output_files.R R/parse_beast_posterior.R R/parse_beast_state.R R/parse_beast_tracelog_file.R R/parse_beast_trees.R R/remove_burn_in.R R/remove_burn_ins.R R/save_beast_estimates.R R/save_beast_trees.R R/tracerer-package.R README.md code_of_conduct.md

codemeta.json

faq.md

inst/CITATION

inst/WORDLIST

inst/extdata/anthus_2_4.log

inst/extdata/anthus_2_4.state

inst/extdata/anthus_2_4.xml

inst/extdata/anthus_2_4_a.trees

inst/extdata/anthus_2_4_b.trees

inst/extdata/anthus_aco.fas

inst/extdata/anthus_nd2.fas

inst/extdata/beast2_example_output.log

inst/extdata/beast2_example_output.trees

inst/extdata/beast2_example_output.xml

inst/extdata/beast2_example_output.xml.state

inst/extdata/mcbette_issue_8.trees

inst/extdata/missing_end.trees

inst/extdata/unplottable_anthus_aco.trees

man/calc_act.Rd man/calc_act_cpp.Rd man/calc_act_r.Rd man/calc_ess.Rd man/calc_esses.Rd man/calc_geom_mean.Rd man/calc_hpd_interval.Rd man/calc_mode.Rd man/calc_std_error_of_mean_cpp.Rd man/calc_stderr_mean.Rd man/calc_summary_stats.Rd man/calc_summary_stats_trace.Rd man/calc_summary_stats_traces.Rd man/check_trace.Rd man/count_trees_in_file.Rd man/cs_std_dev.Rd man/default_params_doc.Rd man/extract_operators_lines.Rd

man/figures/AppVeyor.png

man/figures/Codecov.png

man/figures/GitHubActions.png

man/figures/TravisCI.png

man/figures/tracerer_logo.png

man/get_tracerer_path.Rd man/get_tracerer_paths.Rd man/get_tracerer_tempfilename.Rd man/is_posterior.Rd man/is_trees_file.Rd man/is_trees_posterior.Rd man/parse_beast_log.Rd man/parse_beast_output_files.Rd man/parse_beast_posterior.Rd man/parse_beast_state_operators.Rd man/parse_beast_tracelog_file.Rd man/parse_beast_trees.Rd man/remove_burn_in.Rd man/remove_burn_ins.Rd man/save_beast_estimates.Rd man/save_beast_trees.Rd man/tracerer-package.Rd

mlc_config.json

pics/AppVeyor.png

pics/Codecov.png

pics/README.md

pics/TravisCI.png

pics/ant.png

pics/ant_mono_background.png

pics/ant_mono_background_2.png

pics/distr_2.png

pics/distr_3.png

pics/distr_4.png

pics/distr_5.png

pics/distr_6.png

pics/distr_7.png

pics/distr_8.png

pics/est_2.png

pics/est_3.png

pics/est_4.png

pics/est_5.png

pics/est_6.png

pics/est_7.png

pics/est_8.png

pics/r_logo.png

pics/trace_2.png

pics/trace_3.png

pics/trace_4.png

pics/trace_5.png

pics/trace_6.png

pics/trace_7.png

pics/trace_8.png

pics/tracer.png

pics/tracerer_logo.png

pics/tracerer_logo_1_4.png

pics/tracerer_logo_thin.png

scripts/build_cran.sh

src/.gitignore

src/RcppExports.cpp

src/calc_act_cpp.cpp

src/calc_act_cpp.h

src/calc_std_error_of_mean_cpp.cpp

src/calc_std_error_of_mean_cpp.h

tests/spelling.R tests/testthat.R

tests/testthat/save_beast_estimates

tests/testthat/test-calc_act.R tests/testthat/test-calc_act_cpp.R tests/testthat/test-calc_act_r.R tests/testthat/test-calc_ess.R tests/testthat/test-calc_esses.R tests/testthat/test-calc_geom_mean.R tests/testthat/test-calc_hpd_interval.R tests/testthat/test-calc_mode.R tests/testthat/test-calc_std_error_of_mean_cpp.R tests/testthat/test-calc_stderr_mean.R tests/testthat/test-calc_summary_stats.R tests/testthat/test-check_trace.R tests/testthat/test-count_trees_in_file.R tests/testthat/test-cs_std_dev.R tests/testthat/test-extract_operators_lines.R tests/testthat/test-get_path.R tests/testthat/test-get_paths.R tests/testthat/test-get_tracerer_tempfilename.R tests/testthat/test-is_posterior.R tests/testthat/test-is_trees_file.R tests/testthat/test-is_trees_posterior.R tests/testthat/test-parse_beast_log.R tests/testthat/test-parse_beast_output_files.R tests/testthat/test-parse_beast_posterior.R tests/testthat/test-parse_beast_state_operators.R tests/testthat/test-parse_beast_tracelog_file.R tests/testthat/test-parse_beast_trees.R tests/testthat/test-remove_burn_in.R tests/testthat/test-remove_burn_ins.R tests/testthat/test-save_beast_estimates.R tests/testthat/test-save_beast_trees.R

tracerer.Rproj

vignettes/.gitignore

vignettes/demo.Rmd

vignettes/densitree_example_output.png

vignettes/tracer_distr_posterior.png

vignettes/tracer_example_output.png

vignettes/tracer_trace_posterior.png

vignettes/tracerer_logo.png

richelbilderbeek/tracerer documentation built on Oct. 2, 2023, 7:32 a.m.