## This is directly from callr; once that's on CRAN I'll set up a
## direct dependency I think.
call_system <- function(command, args, env=character(), max_lines=20,
p=0.8) {
res <- suppressWarnings(system2(command, args,
env=env, stdout=TRUE, stderr=TRUE))
ok <- attr(res, "status")
if (!is.null(ok) && ok != 0) {
max_nc <- getOption("warning.length")
cmd <- paste(c(env, shQuote(command), args), collapse = " ")
msg <- sprintf("Running command:\n %s\nhad status %d", cmd, ok)
errmsg <- attr(cmd, "errmsg")
if (!is.null(errmsg)) {
msg <- c(msg, sprintf("%s\nerrmsg: %s", errmsg))
}
sep <- paste(rep("-", getOption("width")), collapse="")
## Truncate message:
if (length(res) > max_lines) {
n <- ceiling(max_lines * p)
res <- c(utils::head(res, ceiling(max_lines - n)),
sprintf("[[... %d lines dropped ...]]", length(res) - max_lines),
utils::tail(res, ceiling(n)))
}
## compute the number of characters so far, including three new lines:
nc <- (nchar(msg) + nchar(sep) * 2) + 3
i <- max(1, which(cumsum(rev(nchar(res) + 1L)) < (max_nc - nc)))
res <- res[(length(res) - i + 1L):length(res)]
msg <- c(msg, "Program output:", sep, res, sep)
stop(paste(msg, collapse="\n"))
}
invisible(res)
}
Sys_which <- function(x) {
ret <- Sys.which(x)
if (ret == "") {
stop(sprintf("%s not found in $PATH", x))
}
ret
}
## For working around testthat
assert_tests_passed <- function(obj=.Last.value) {
obj <- as.data.frame(obj)
if (any(obj$failed > 0) || any(obj$error)) {
stop("Tests were not successful")
}
}
read_dcf <- function(x) {
dat <- read.dcf(x)
set_names(as.list(dat), tolower(colnames(dat)))
}
writeLines_gz <- function(text, filename, ...) {
con <- gzfile(filename)
on.exit(close(con))
writeLines(text, con, ...)
}
set_names <- function(x, names) {
names(x) <- names
x
}
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