README.md
In richfitz/rlsoda: Call 'LSODA' From R
rlsoda
Highly experimental.
Installation
For now, run ./setup.sh in the root to clone/update the upstream liblsoda sources. Yes, this could be done with submodules, but they're a total faff. Soon I'll include the sources directly as we'll need that for travis really, and to work with things like install_github.
After that, running make install will install the package into your default R library.
The interface
The interface here is related to dde and differs slightly from deSolve. Probably the dde / rlsoda differences can be smoothed over. The interface is tuned so that all modifications to the integrated data are optional so that where speed is really important (e.g., running an MCMC chain with the output of the ODE) unnecessary modifications are not done. This will require some modifications for functions expecting deSolve-like output.
The library
This package uses Simon Frost's liblsoda. For ease of installation, this is bundled into the package here.
liblsoda is a thread-safe C rewrite of the venerable Fortran LSODA algorith (from the Linda Petzold and Alan Hindmarsh).
richfitz/rlsoda documentation built on May 27, 2019, 8:41 a.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
rlsoda
Highly experimental.
Installation
For now, run ./setup.sh in the root to clone/update the upstream liblsoda sources. Yes, this could be done with submodules, but they're a total faff. Soon I'll include the sources directly as we'll need that for travis really, and to work with things like install_github.
After that, running make install will install the package into your default R library.
The interface
The interface here is related to dde and differs slightly from deSolve. Probably the dde / rlsoda differences can be smoothed over. The interface is tuned so that all modifications to the integrated data are optional so that where speed is really important (e.g., running an MCMC chain with the output of the ODE) unnecessary modifications are not done. This will require some modifications for functions expecting deSolve-like output.
The library
This package uses Simon Frost's liblsoda. For ease of installation, this is bundled into the package here.
liblsoda is a thread-safe C rewrite of the venerable Fortran LSODA algorith (from the Linda Petzold and Alan Hindmarsh).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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