API for rmflight/categoryCompare2
Meta-analysis of high-throughput experiments using feature annotations

Global functions
add_data_to_graph Man page Source code
add_tooltip Man page Source code
annotation Man page Man page Source code
annotation_2_json Man page Source code
annotation_combinations Man page Source code
annotation_combinations,cc_graph-method Man page
annotation_combinations,significant_annotations-method Man page
annotation_gene_table Man page Source code
assign_colors Man page Source code
assign_communities Man page Source code
assign_features Source code
base64_encode_images Source code
cc_graph Man page Man page Source code
combine_annotation_features Man page Source code
combine_annotations Source code
combine_annotations,list-method Man page
combine_enrichments Source code
combine_enrichments,enriched_result-method Man page
combine_enrichments_multiple Source code
combine_enrichments_single Source code
combine_text Man page Source code
combined_coefficient Man page Source code
combined_enrichment Man page
combined_enrichment-class Man page
combined_significant_calls Man page Source code
combined_statistics Man page Man page Source code
count_go_children Man page Source code
csv_annotation_table Man page Source code
enriched_result Man page Man page Source code
executable_path Man page Source code
extract_statistics Man page
extract_statistics,combined_enrichment-method Man page
extract_statistics,statistical_results-method Man page
extract_statistics_combined_enrichment Source code
extract_statistics_statistical_results Source code
filter_annotation_graph Man page Source code
generate_annotation_graph Man page Source code
generate_annotation_graph,combined_enrichment-method Man page
generate_annotation_similarity_graph Man page Source code
generate_colors Man page Source code
generate_legend Man page Source code
generate_link Man page Source code
generate_piecharts Man page Source code
generate_table Man page Source code
generate_table,combined_enrichment-method Man page
get_db_annotation Man page Source code
get_significant_annotations Man page
get_significant_annotations,combined_enrichment-method Man page
get_significant_annotations,statistical_results-method Man page
get_significant_annotations_calls Man page Source code
get_significant_combined_enrichment Source code
get_significant_stat_results Source code
graph_to_visnetwork Man page Source code
have_parallel Man page Source code
hypergeom_features-class Man page
hypergeometric_basic Man page Source code
hypergeometric_feature_enrichment Man page Source code
install_executables Man page Source code
jaccard_coefficient Man page Source code
json_2_annotation Man page Source code
json_annotation_reversal Man page Source code
kable_annotation_table Man page Source code
label_communities Man page Source code
label_go_communities Man page Source code
multi_query_list Man page Source code
multi_query_list_calls Source code
node_assign Man page
node_assign-class Man page
overlap_coefficient Man page Source code
remove_edges,CytoscapeWindowClass,numeric-method Man page
remove_edges,cc_graph,numeric-method Man page
remove_edges_ccgraph Source code
remove_edges_cw Source code
replace_null Source code
show,annotation-method Man page
show,cc_graph-method Man page
show,combined_statistics-method Man page
show,enriched_result-method Man page
show,node_assign-method Man page
show,significant_annotations-method Man page
significant_annotations Man page Man page Source code
statistical_results Man page
statistical_results-class Man page
table_from_graph Man page Source code
vis_in_cytoscape Man page Source code
vis_visnetwork Man page Source code
rmflight/categoryCompare2 documentation built on June 1, 2018, 8:05 a.m.