Man pages for rmflight/categoryCompare2
Meta-analysis of high-throughput experiments using feature annotations

add_data_to_graphadd table data to graph
add_tooltipadd tooltip
annotationannotation class
annotation_2_jsonannotation to json
annotation_combinationsunique annotation combinations
annotation_combinations-cc_graph-methodunique combinations
annotation_combinations-significant_annotations-methodunique combinations
annotation_constructorannotation constructor
annotation_gene_tableannotation to genes
assign_colorsassign colors
assign_communitiesassign communities
cc_graphcc_graph
combine_annotation_featurescombine annotation-features
combine_annotations-list-methodcombine annotations
combined_coefficientcombined coefficient
combined_enrichment-classcombined enrichments
combined_significant_callsget significant annotations calls
combined_statisticscombined statistics
combine_enrichments-enriched_result-methodcombine enrichments
combine_textcombine text
count_go_childrenGO children
csv_annotation_tableprint table csv
enriched_resultthe enriched results class
enriched_result_constructorcreates enriched result
executable_pathexecutable path
extract_statisticsget statistics
extract_statistics-combined_enrichment-methodextract statistics
extract_statistics-statistical_results-methodextract statistics
filter_annotation_graphfilter graph by significant entries
generate_annotation_graphgenerate annotation graph
generate_annotation_graph-combined_enrichment-methodgenerate the annotation graph
generate_annotation_similarity_graphannotation similarity graph
generate_colorsgenerate colors
generate_legendgenerate a legend
generate_linkgenerate link text
generate_piechartscreate piecharts for visualization
generate_tablegenerate statistical table
generate_table-combined_enrichment-methodgenerate table
get_db_annotationorgdb annotations
get_significant_annotationsget significant annotations
get_significant_annotations_callsget significant annotations calls
get_significant_annotations-combined_enrichment-methodget significant annotations
get_significant_annotations-statistical_results-methodget significant annotations
graph_to_visnetworkcc_graph to visnetwork
have_parallelchoose apply
hypergeometric_basicdo hypergeometric test
hypergeometric_feature_enrichmentdo hypergeometric enrichment
hypergeom_features-classhypergeom feature class
install_executablesinstall executables
jaccard_coefficientjaccard coefficient
json_2_annotationjson to annotation
json_annotation_reversalannotation reversal
kable_annotation_tableprint table kable
label_communitieslabel communities
label_go_communitieslabel GO communities
multi_query_listindex a list
node_assign-classnode_assign
overlap_coefficientoverlap coefficient
remove_edges-cc_graph-numeric-methodremove graph edges
remove_edges-CytoscapeWindowClass-numeric-methodremove edges
show-annotation-methodshow annotation
show-cc_graph-methodshow cc_graph enrichment
show-combined_statistics-methodshow combined_statistics
show-enriched_result-methodshow enriched_result
show-node_assign-methodshow node_assign
show-significant_annotations-methodshow signficant_annotations
significant_annotationssignificant annotations
statistical_results-classstatistical results class
table_from_graphtable from graph
vis_in_cytoscapevisualize in cytoscape
vis_visnetworkvis in visNetwork
rmflight/categoryCompare2 documentation built on June 1, 2018, 8:05 a.m.