#' Copyright(c) 2017-2020 R. Mark Sharp
#' This file is part of nprcgenekeepr
context("addUIds")
library(testthat)
pedOne <- data.frame(id = c("s1", "d1", "s2", "d2", "o1", "o2", "o3", "o4"),
sire = c(NA, "s0", "s4", NA, "s1", "s1", "s2", "s2"),
dam = c(NA, "d0", "d4", NA, "d1", "d2", "d2", "d2"),
sex = c("M", "F", "M", "F", "F", "F", "F", "M"),
stringsAsFactors = FALSE)
pedTwo <- data.frame(id = c("s1", "d1", "s2", "d2", "o1", "o2", "o3", "o4"),
sire = c(NA, "s0", "s4", NA, "s1", "s1", "s2", "s2"),
dam = c("d0", "d0", "d4", NA, "d1", "d2", "d2", "d2"),
sex = c("M", "F", "M", "F", "F", "F", "F", "M"),
stringsAsFactors = FALSE)
pedThree <- data.frame(id = c("s1", "d1", "s2", "d2", "o1", "o2", "o3", "o4"),
sire = c("s0", "s0", "s4", NA, "s1", "s1", "s2", "s2"),
dam = c(NA, "d0", "d4", NA, "d1", "d2", "d2", "d2"),
sex = c("M", "F", "M", "F", "F", "F", "F", "M"),
stringsAsFactors = FALSE)
test_that("addUIds modifies the correct IDs in the right way", {
newPed <- addUIds(pedOne)
expect_equal(newPed, pedOne)
newPed <- addUIds(pedTwo)
expect_equal(newPed$sire[newPed$id == "s1"], "U0001")
newPed <- addUIds(pedThree)
expect_equal(newPed$dam[newPed$id == "s1"], "U0001")
})
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