Man pages for road2stat/hdnom
Benchmarking and Visualization Toolkit for Penalized Cox Models

as_nomogramNomograms for high-dimensional Cox models
calibrateCalibrate high-dimensional Cox models
calibrate_externalExternally calibrate high-dimensional Cox models
calibrate_external_surv_prob_trueCompute Kaplan-Meier estimated survival probabilities for...
calibrate_surv_prob_trueCompute Kaplan-Meier estimated survival probabilities for...
compare_by_calibrateCompare high-dimensional Cox models by model calibration
compare_by_validateCompare high-dimensional Cox models by model validation
fit_aenetModel selection for high-dimensional Cox models with adaptive...
fit_alassoModel selection for high-dimensional Cox models with adaptive...
fit_enetModel selection for high-dimensional Cox models with...
fit_flassoModel selection for high-dimensional Cox models with fused...
fit_lassoModel selection for high-dimensional Cox models with lasso...
fit_mcpModel selection for high-dimensional Cox models with MCP...
fit_mnetModel selection for high-dimensional Cox models with Mnet...
fit_scadModel selection for high-dimensional Cox models with SCAD...
fit_snetModel selection for high-dimensional Cox models with Snet...
glmnet_basesurvBreslow baseline hazard estimator for glmnet objects
glmnet_calibrate_external_surv_prob_predCompute glmnet predicted survival probabilities for external...
glmnet_calibrate_surv_prob_predCompute glmnet predicted survival probabilities for...
glmnet_survcurveSurvival curve prediction for glmnet objects
glmnet_tune_alphaAutomatic alpha tuning function by k-fold cross-validation
glmnet_validate_external_taucCompute external validation measures for glmnet objects
glmnet_validate_taucCompute validation measures for glmnet objects
hdnom-packagehdnom: Benchmarking and Visualization Toolkit for Penalized...
infer_variable_typeExtract information of selected variables from...
kmplotKaplan-Meier plot with number at risk table for internal...
kmplot_rawKaplan-Meier Plot with Number at Risk Table
logrank_testLog-rank test for internal calibration and external...
ncvreg_basesurvBreslow baseline hazard estimator for ncvreg objects
ncvreg_calibrate_external_surv_prob_predCompute ncvreg predicted survival probabilities for external...
ncvreg_calibrate_surv_prob_predCompute ncvreg predicted survival probabilities for...
ncvreg_survcurveSurvival curve prediction for ncvreg objects
ncvreg_tune_gammaAutomatic MCP/SCAD gamma tuning function by k-fold...
ncvreg_tune_gamma_alphaAutomatic Mnet/Snet gamma and alpha tuning function by k-fold...
ncvreg_validate_external_taucCompute external validation measures for ncvreg model objects
ncvreg_validate_taucCompute validation measures for ncvreg model objects
palette_aaasColor Palette for AAAS Journals
palette_jcoColor Palette for Journal of Clinical Oncology (JCO)
palette_lancetColor Palette for Lancet Journals
palette_npgColor Palette for NPG Journals
penalized_basesurvBreslow baseline hazard estimator for penfit objects
penalized_calibrate_external_surv_prob_predCompute penfit predicted survival probabilities for external...
penalized_calibrate_surv_prob_predCompute penfit predicted survival probabilities for...
penalized_survcurveSurvival curve prediction for penfit objects
penalized_tune_lambdaAutomatic lambda tuning function for fused lasso by k-fold...
penalized_validate_external_taucCompute external validation measures for penfit model objects
penalized_validate_taucCompute validation measures for penfit model objects
plot.hdnom.calibratePlot calibration results
plot.hdnom.calibrate.externalPlot external calibration results
plot.hdnom.compare.calibratePlot model comparison by calibration results
plot.hdnom.compare.validatePlot model comparison by validation results
plot.hdnom.nomogramPlot nomogram objects
plot.hdnom.validatePlot optimism-corrected time-dependent discrimination curves...
plot.hdnom.validate.externalPlot time-dependent discrimination curves for external...
predict.hdnom.modelMake predictions from high-dimensional Cox models
print.hdnom.calibratePrint calibration results
print.hdnom.calibrate.externalPrint external calibration results
print.hdnom.compare.calibratePrint model comparison by calibration results
print.hdnom.compare.validatePrint model comparison by validation results
print.hdnom.modelPrint high-dimensional Cox model objects
print.hdnom.nomogramPrint nomograms objects
print.hdnom.validatePrint validation results
print.hdnom.validate.externalPrint external validation results
smartImputed SMART study data
smartoOriginal SMART study data
summary.hdnom.calibrateSummary of calibration results
summary.hdnom.calibrate.externalSummary of external calibration results
summary.hdnom.compare.calibrateSummary of model comparison by calibration results
summary.hdnom.compare.validateSummary of model comparison by validation results
summary.hdnom.validateSummary of validation results
summary.hdnom.validate.externalSummary of external validation results
validateValidate high-dimensional Cox models with time-dependent AUC
validate_externalExternally validate high-dimensional Cox models with...
road2stat/hdnom documentation built on Jan. 15, 2019, 2:30 a.m.