R/data.R

#' Illumina 27k BeadChip mapped to Genome Reference hg19
#'
#' Automatically loaded by \code{\link{select_informative_sites}}.
#' @source \url{https://support.illumina.com/array/array_kits/infinium_humanmethylation27_beadchip_kit.html.html}
"illumina27k_hg19"

#' Illumina 27k BeadChip mapped to Genome Reference hg38
#'
#' Automatically loaded by \code{\link{select_informative_sites}}.
#' @source \url{https://support.illumina.com/array/array_kits/infinium_humanmethylation27_beadchip_kit.html.html}
"illumina27k_hg38"

#' Illumina 27k BeadChip mapped to Genome Reference hg19
#'
#' Automatically loaded by \code{\link{select_informative_sites}}.
#' @source \url{https://support.illumina.com/array/array_kits/infinium_humanmethylation450_beadchip_kit.html.html}
"illumina450k_hg19"

#' Illumina 450k BeadChip mapped to Genome Reference hg38
#'
#' Automatically loaded by \code{\link{select_informative_sites}}.
#' @source \url{https://support.illumina.com/array/array_kits/infinium_humanmethylation27_beadchip_kit.html.html}
"illumina450k_hg38"

#' Illumina Tumor Toy data
#'
#' Example of tumor beta values from Illumina BeadChip
"tumor_toy_data"

#' Illumina Control Toy data
#'
#' Example of control beta values from Illumina BeadChip
"control_toy_data"

#' Curated set of CpG islands
#'
#' Downloaded on 2016-03-01.
#' @source \url{https://genome.ucsc.edu/}
"cpg_islands"

#' BS-Seq Toy data
#'
#' Example of tumor and control beta values from Bisulphite Sequencing
"bs_seq_toy_matrix"

#' BS-Seq Toy sites
#'
#' Example of data.frame with location of CpG sites
"bs_seq_toy_sites"
romagnolid/PAMES documentation built on Dec. 7, 2022, 10:37 a.m.