API for ropensci/beautier
'BEAUti' from R

Global functions
are_clock_models Man page
are_equal_mcmcs Man page
are_equivalent_xml_lines Man page
are_equivalent_xml_lines_all Man page
are_equivalent_xml_lines_loggers Man page
are_equivalent_xml_lines_operators Man page
are_equivalent_xml_lines_section Man page
are_site_models Man page
are_tree_priors Man page
bd_tree_prior_to_xml_prior_distr Man page
beautier Man page
beautier-package Man page
cbs_tree_prior_to_xml_prior_distr Man page
ccp_tree_prior_to_xml_prior_distr Man page
cep_tree_prior_to_xml_prior_distr Man page
check_beauti_options Man page
check_clock_model Man page
check_clock_models Man page
check_inference_model Man page
check_inference_models Man page
check_mcmc Man page
check_mrca_prior Man page
check_phylogeny Man page
check_rln_clock_model Man page
check_site_model Man page
check_site_models Man page
check_strict_clock_model Man page
check_tree_prior Man page
check_tree_priors Man page
create_alpha_param Man page
create_bd_tree_prior Man page
create_beast2_input Man page
create_beast2_input_distr_lh Man page
create_beast2_input_distr_prior Man page
create_beast2_input_file Man page
create_beast2_input_file_from_model Man page
create_beast2_input_screenlog Man page
create_beast2_input_tracelog Man page
create_beast2_input_treelogs Man page
create_beauti_options Man page
create_beta_distr Man page
create_beta_param Man page
create_cbs_tree_prior Man page
create_ccp_tree_prior Man page
create_cep_tree_prior Man page
create_clock_model Man page
create_clock_model_from_name Man page
create_clock_model_rln Man page
create_clock_model_strict Man page
create_clock_models Man page
create_clock_models_from_names Man page
create_clock_rate_param Man page
create_distr Man page
create_distr_beta Man page
create_distr_exp Man page
create_distr_gamma Man page
create_distr_inv_gamma Man page
create_distr_laplace Man page
create_distr_log_normal Man page
create_distr_normal Man page
create_distr_one_div_x Man page
create_distr_poisson Man page
create_distr_uniform Man page
create_exp_distr Man page
create_gamma_distr Man page
create_gamma_site_model Man page
create_gtr_site_model Man page
create_hky_site_model Man page
create_inference_model Man page
create_inv_gamma_distr Man page
create_jc69_site_model Man page
create_kappa_1_param Man page
create_kappa_2_param Man page
create_lambda_param Man page
create_laplace_distr Man page
create_log_normal_distr Man page
create_m_param Man page
create_mcmc Man page
create_mcmc_nested_sampling Man page
create_mean_param Man page
create_mrca_prior Man page
create_mu_param Man page
create_nested_sampling_mcmc Man page
create_normal_distr Man page
create_one_div_x_distr Man page
create_param Man page
create_param_alpha Man page
create_param_beta Man page
create_param_clock_rate Man page
create_param_kappa_1 Man page
create_param_kappa_2 Man page
create_param_lambda Man page
create_param_m Man page
create_param_mean Man page
create_param_mu Man page
create_param_rate_ac Man page
create_param_rate_ag Man page
create_param_rate_at Man page
create_param_rate_cg Man page
create_param_rate_ct Man page
create_param_rate_gt Man page
create_param_s Man page
create_param_scale Man page
create_param_sigma Man page
create_poisson_distr Man page
create_rate_ac_param Man page
create_rate_ag_param Man page
create_rate_at_param Man page
create_rate_cg_param Man page
create_rate_ct_param Man page
create_rate_gt_param Man page
create_rln_clock_model Man page
create_s_param Man page
create_scale_param Man page
create_sigma_param Man page
create_site_model Man page
create_site_model_from_name Man page
create_site_model_gtr Man page
create_site_model_hky Man page
create_site_model_jc69 Man page
create_site_model_tn93 Man page
create_site_models Man page
create_site_models_from_names Man page
create_strict_clock_model Man page
create_tn93_site_model Man page
create_tree_prior Man page
create_tree_prior_bd Man page
create_tree_prior_cbs Man page
create_tree_prior_ccp Man page
create_tree_prior_cep Man page
create_tree_prior_from_name Man page
create_tree_prior_yule Man page
create_tree_priors Man page
create_tree_priors_from_names Man page
create_uniform_distr Man page
create_yule_tree_prior Man page
default_parameters_doc Man page
default_params_doc Man page
distr_to_xml_beta Man page
distr_to_xml_exp Man page
distr_to_xml_gamma Man page
distr_to_xml_inv_gamma Man page
distr_to_xml_laplace Man page
distr_to_xml_log_normal Man page
distr_to_xml_normal Man page
distr_to_xml_one_div_x Man page
distr_to_xml_poisson Man page
distr_to_xml_uniform Man page
fasta_to_phylo Man page
fastas_to_phylos Man page
get_alignment_id Man page
get_alignment_ids Man page
get_beautier_path Man page
get_beautier_paths Man page
get_clock_model_names Man page
get_crown_age Man page
get_fasta_filename Man page
get_gamma_site_model_n_distrs Man page
get_site_model_names Man page
get_taxa_names Man page
get_tree_prior_names Man page
has_mrca_prior Man page
init_bd_tree_prior Man page
init_ccp_tree_prior Man page
init_cep_tree_prior Man page
init_gtr_site_model Man page
init_hky_site_model Man page
init_jc69_site_model Man page
init_rln_clock_model Man page
init_strict_clock_model Man page
init_tn93_site_model Man page
init_yule_tree_prior Man page
is_bd_tree_prior Man page
is_cbs_tree_prior Man page
is_ccp_tree_prior Man page
is_cep_tree_prior Man page
is_clock_model Man page
is_init_beta_distr Man page
is_init_cep_tree_prior Man page
is_init_exp_distr Man page
is_init_gamma_distr Man page
is_init_inv_gamma_distr Man page
is_init_laplace_distr Man page
is_init_log_normal_distr Man page
is_init_normal_distr Man page
is_init_one_div_x_distr Man page
is_init_poisson_distr Man page
is_init_uniform_distr Man page
is_mcmc Man page
is_mcmc_nested_sampling Man page
is_nested_sampling_mcmc Man page
is_one_na Man page
is_phylo Man page
is_site_model Man page
is_tree_prior Man page
is_yule_tree_prior Man page
parameter_to_xml_alpha Man page
parameter_to_xml_beta Man page
parameter_to_xml_clock_rate Man page
parameter_to_xml_kappa_1 Man page
parameter_to_xml_kappa_2 Man page
parameter_to_xml_lambda Man page
parameter_to_xml_m Man page
parameter_to_xml_mean Man page
parameter_to_xml_mu Man page
parameter_to_xml_rate_ac Man page
parameter_to_xml_rate_ag Man page
parameter_to_xml_rate_at Man page
parameter_to_xml_rate_cg Man page
parameter_to_xml_rate_ct Man page
parameter_to_xml_rate_gt Man page
parameter_to_xml_s Man page
parameter_to_xml_scale Man page
parameter_to_xml_sigma Man page
yule_tree_prior_to_xml_prior_distr Man page
ropensci/beautier documentation built on May 14, 2019, 8:52 p.m.