examples/get_txids.R
In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'
data('bromeliads')
# get all the genus IDs and names
genus_ids <- get_txids(phylota = bromeliads, txids = bromeliads@txids,
rnk = 'genus')
genus_ids <- unique(genus_ids)
# drop empty IDs -- this happens if a given lineage has no ID for specified rank
genus_ids <- genus_ids[genus_ids != '']
# get names
(get_tx_slot(phylota = bromeliads, txid = genus_ids, slt_nm = 'scnm'))
ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.
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data('bromeliads')
# get all the genus IDs and names
genus_ids <- get_txids(phylota = bromeliads, txids = bromeliads@txids,
rnk = 'genus')
genus_ids <- unique(genus_ids)
# drop empty IDs -- this happens if a given lineage has no ID for specified rank
genus_ids <- genus_ids[genus_ids != '']
# get names
(get_tx_slot(phylota = bromeliads, txid = genus_ids, slt_nm = 'scnm'))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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