Man pages for ropensci/taxa
Classes for Storing and Manipulating Taxonomic Data
| as_data_frame | Convert a taxa object to a 'data.frame' |
| as_taxon | Convert to a taxon vector |
| check_taxon_rank_order | Check that order is ascending |
| classification | Taxon class |
| contains | dplyr select_helpers |
| database_ref | Database list |
| db_ref | Valid taxonomy databases |
| default_db_ref | Defines valid taxonomic databases |
| delete_unused_class_taxa | Removes taxa from the taxonomy of a classification that are... |
| duplicated_index | Returns the index of the first occurrence of each unique... |
| duplicated_index_taxonomy | Returns the index of the first occurrence of each unique... |
| ends_with | dplyr select_helpers |
| everything | dplyr select_helpers |
| font_default | Default font |
| font_na | Font for NAs in print methods |
| font_punct | Punctuation formatting in print methods |
| font_secondary | Font for secondary data |
| font_tax_name | Taxon name formatting in print methods |
| grapes-greater-than-grapes | magrittr forward-pipe operator |
| grapes-in-grapes | Value matching for taxa package |
| impute_order_na | Fill in NA values in sequence |
| interleave | Interleaves two vectors |
| internodes | Get internodes |
| is_classification | Check if is a classification |
| is_internode | Check if taxa are internodes |
| is_leaf | Check if taxa are leaves |
| is_root | Test if taxa are roots |
| is_stem | Check if taxa are stems |
| is_taxon | Check if something is a taxon object |
| is_taxon_authority | Check if is a taxon_authority |
| is_taxon_db | Check if something is a taxon_db |
| is_taxon_id | Check if something is a taxon_id object |
| is_taxonomy | Check if something is a taxonomy |
| is_taxon_rank | Check if something is a taxon_rank |
| is_taxon_rank_level | Check if is a taxon id |
| is_valid_regex | Check regex validity |
| leaves | Get leaves |
| limited_print | Print a subset of a character vector |
| matches | dplyr select_helpers |
| new_classification | Minimal classfication constructor |
| new_taxon | Minimal taxon constructor |
| new_taxon_authority | Minimal taxon_authority constructor |
| new_taxon_db | Minimal taxon_db constructor |
| new_taxon_db_def | Minimal taxon_db_def constructor |
| new_taxon_id | Minimal taxon_id constructor |
| new_taxonomy | Minimal taxonomy constructor |
| new_taxon_rank | Minimal taxon_rank constructor |
| new_taxon_rank_level | Minimal taxon_rank_level constructor |
| n_leaves | Number of leaves per taxon |
| n_subtaxa | Number of subtaxa per taxon |
| n_supertaxa | Number of supertaxa per taxon |
| num_range | dplyr select_helpers |
| one_of | dplyr select_helpers |
| printed_classification | Prepare classification for printing |
| printed_taxon | Prepare taxon for printing |
| printed_taxon_authority | Prepare taxon_authority for printing |
| printed_taxon_id | Prepare taxon_id for printing |
| printed_taxonomy | Prepare taxonomy for printing |
| printed_taxon_rank | Prepare taxon_rank for printing |
| printed_taxon_rank_level | Prepare taxon_rank_level for printing |
| print_with_color | Print that works with color |
| rank_level_color_funcs | Get font color for levels |
| rank_ref | All known taxonomic ranks |
| roots | Get root taxa |
| starts_with | dplyr select_helpers |
| stems | Get stems |
| subtaxa | Get subtaxa |
| supertaxa | Get supertaxa |
| taxa_casting_funcs | taxa casting functions |
| taxa_coercion_funcs | taxa coercion functions |
| taxa_comparison_funcs | taxa comparison functions |
| taxa_printing_funcs | taxa printing functions |
| taxa_taxon | Taxon class |
| taxa_taxon_authority | Taxon authority class |
| taxa_taxon_db | Taxon database class |
| taxa_taxon_id | Taxon ID class |
| taxa_taxonomy | Taxonomy class |
| taxa_taxon_rank | Taxon rank class |
| tax_auth | Set and get taxon authorities |
| tax_author | Set and get taxon authors |
| tax_cite | Set and get taxon authority citations |
| tax_date | Set and get taxon authority dates |
| tax_db | Set and get taxon ID databases |
| tax_id | Set and get taxon IDs |
| tax_name | Set and get taxon names |
| taxon | Taxon class |
| taxon_authority | Taxon authority class |
| taxon_db | Taxon database class |
| taxon_db_def | Taxon database definition class |
| taxon_id | Taxon ID class |
| taxonomy | Taxonomy class |
| taxon_rank | Taxon rank class |
| taxon_rank_level | Taxon rank level |
| tax_rank | Set and get taxon ranks |
| unname_fields | Remove names from fields in a vctrs rcrd |
