NEWS.md

In rqtl/qtl2cl: Command-Line Interface for R/qtl2

qtl2cl 0.23 (2023-08-24)

• Replace calls to qtl2::read_csv() which is now qtl2::fread_csv().

qtl2cl 0.22 (2020-05-21)

• No real changes; just keeping in sync with the qtl2 package.

qtl2cl 0.20 (2019-06-03)

• Use Markdown for function documentation, throughout

qtl2cl 0.16 (2018-07-23)

• No real changes; just keeping in sync with the qtl2 package.

qtl2cl 0.14 (2018-03-09)

• No real changes; just keeping in sync with the qtl2 package.

qtl2cl 0.12 (2018-01-19)

• Again, no actual changes; just keeping in sync with the qtl2 package.

qtl2cl 0.10 (2018-01-09)

• No actual changes; just keeping in sync with the qtl2 package.

qtl2cl 0.8 (2018-01-05)

• First formal release

qtl2cl 0.5-4 (2017-06-07)

New features

• Add argument compress for indicating whether to save compressed RDS files or not; default is not to compress (so bigger files, but faster to write/read).

qtl2cl 0.5-3 (2017-06-05)

Minor changes

• Remove normalize option for calc_kinship because no longer present in qtl2geno.

• Revised installation instructions.

qtl2cl 0.5-2 (2017-03-07)

New features

• Revised to deal with changes to R/qtl2 data structures in qtl2geno and qtl2scan.

• With --calc_genoprob, you can now specify --map_file=some_file.rds; if provided, the genetic map of markers/pseudomarkers is saved to an RDS file.

• With --scan1, you can now specify --map_file=some_file.rds; if provided and --output is not, the printed JSON object includes chromosome and position columns.

rqtl/qtl2cl documentation built on Oct. 13, 2024, 1:11 a.m.