matrix
inherits from array
)calculate_homology
now accepts any variable storing a distance matrix as long as it can be coerced to a matrixcalculate_homology
to return a data frame instead of a matrixflat = TRUE
in plot_persist
)standardize
parameter to calculate_homology
and functionality to standardize point cloud sizelimit.num
parameter to phom.dist
and functionality to consider only "significant" topological featuresphom.dist
function to compare persistent homology of two point clouds/matricesplot_persist
where setting a shorter axis limit would cause the reference diagonal to disappear (thank you, @corybrunson)plot_persist
output figures still preserves one-to-one length ratio of horizontal and vertical axes (fixed coordinate system; thank you, @corybrunson)permutation_test
function that resulted in NAs in outputindex_t
in C++ code; should make TDAstats compatible with Solaris systemsdim
parameter to permutation_test
function to allow users to select maximum dimension for homology comparisontestthat
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