Man pages for rsetienne/DAISIE
Dynamical Assembly of Islands by Speciation, Immigration and Extinction

DAISIE_convertprobdistConverts the joint distribution of endemics and non-endemics...
DAISIE_dataprepPrepare colonisation and branching time data to run in...
DAISIE_ExpEINThe expected number of endemics and non-endemics under the...
DAISIE-internalInternal DAISIE Functions
DAISIE_loglik_CSComputes the loglikelihood of the DAISIE model with...
DAISIE_loglik_IWComputes the loglikelihood of the DAISIE model with...
DAISIE_margprobdistThe marginal distribution of endemics and non-endemics under...
DAISIE_ML_CSMaximization of the loglikelihood under the DAISIE model with...
DAISIE_ML_IWMaximization of the loglikelihood under the DAISIE model with...
DAISIE_MW_MLMaximization of the loglikelihood under the DAISIE model with...
DAISIE_numcolThe expectation and marginal distribution of the number of...
DAISIE-packageDynamical Assembly of Islands by Speciation, Immigration and...
DAISIE_plot_age_diversityPlot clade age against clade diversity.
DAISIE_plot_islandPlot colonisation and branching time of species found on an...
DAISIE_plot_simsPlot island species-through-time (STT) plots
DAISIE_probdistThe joint distribution of endemics and non-endemics under the...
DAISIE_simSimulate islands with given parameters.
DAISIE_SR_loglik_CSComputes the loglikelihood of the DAISIE model with...
DAISIE_SR_ML_CSMaximization of the loglikelihood under the DAISIE model with...
DAISIE_tutorialOpens DAISIE tutorial
Galapagos_datalistColonization and branching times of 8 terrestrial avifaunal...
Galapagos_datalist_2typesColonization and branching times of 8 terrestrial avifaunal...
Galapagos_datatableColonization and branching times of 8 terrestrial avifaunal...
islands_10reps_RAW1000 islands in RAW format simulated with the ML parameters...
islands_1type_1000reps1000 islands in DAISIE format simulated with the ML...
islands_2types_1000reps1000 islands in DAISIE format simulated with the ML...
Macaronesia_datalistColonization and branching times of terrestrial avifaunal...
rsetienne/DAISIE documentation built on Oct. 26, 2018, 10:16 p.m.