ruidlpm/pathPhynder: A workflow for integrating ancient lineages into present-day Y-chromosome phylogenies.

This workflow offers a solution for integrating ancient and present-day Y-chromososome data, first by identifiying informative Y-chromosome markers in a high coverage dataset, second, by calling and filtering these SNPs in ancient samples and lastly, by traversing the tree and evaluate the number of derived and ancestral markers in the ancients to find the most likely clade where it belongs.

Getting started

Package details

Maintainer
LicenseMIT
Version0.1
URL https://github.com/ruidlpm/pathPhynder
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ruidlpm/pathPhynder")
ruidlpm/pathPhynder documentation built on June 15, 2019, 4:49 p.m.