Files in samWieczorek/Prostar.2.0

Provides a GUI for DAPAR

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

DESCRIPTION

NAMESPACE

NEWS.md

Prostar.2.0.Rproj

R/prostar.R README.md dev/01_start.R dev/02_dev.R dev/03_deploy.R dev/run_dev.R dev/test_dev/Convert/class_process_convert.R dev/test_dev/Convert/mod_convert.R dev/test_dev/Convert/test_mod_convert.R dev/test_dev/Convert/test_mod_process.R dev/test_dev/Convert/test_process_convert.R dev/test_dev/Customize theme/create_customized_theme.R dev/test_dev/Customize theme/demo_vignette_theme_fresh.R dev/test_dev/DataManager/test-mod_build_design.R dev/test_dev/DataManager/test-mod_build_design_example.R dev/test_dev/DataManager/test-mod_choose_pipeline.R dev/test_dev/DataManager/test-mod_convert_ms_file.R dev/test_dev/DataManager/test-mod_launch_Magellan.R dev/test_dev/DataManager/test-mod_open_dataset.R dev/test_dev/DataManager/test-mod_open_demo_dataset.R dev/test_dev/DataManager/test_launch_pipeline.R dev/test_dev/DataManager/test_mod_dataManager.R dev/test_dev/UI_for_func_params/mod_norm_QuantileCentering_UI.R dev/test_dev/UI_for_func_params/mod_norm_loess_UI.R dev/test_dev/UI_for_func_params/mod_norm_vsn_UI.R dev/test_dev/UI_for_func_params/test-params-for-methodsUI-in-pipeline.R dev/test_dev/__modules_new_syntax.R dev/test_dev/gargoyle-example.R dev/test_dev/js_actions_buttons_example.R dev/test_dev/module_pipeline_process_skeleton.R dev/test_dev/modules_graph.R dev/test_dev/observe_dynamically_created_inputs.R dev/test_dev/progressBar/apps_web_search.R dev/test_dev/progressBar/learn_reactiveFileReaderApp.R dev/test_dev/progressBar/learn_reactiveFileReaderCalcul.R dev/test_dev/progressBar/mini-test.R dev/test_dev/progressBar/withProgress_App.R dev/test_dev/progressBar/withProgress_Calcul.R dev/test_dev/prostar_NvCSS/app_test_css.R dev/test_dev/prostar_NvCSS/app_test_dashboard.R dev/test_dev/prostar_NvCSS/app_v_timeline_open_modal.R

dev/test_dev/prostar_NvCSS/tl_style_css.odp

dev/test_dev/prostar_NvCSS/www/fleche.png

dev/test_dev/prostar_NvCSS/www/index.html

dev/test_dev/prostar_NvCSS/www/logo.png

dev/test_dev/prostar_NvCSS/www/part1.html

dev/test_dev/prostar_NvCSS/www/part2.html

dev/test_dev/prostar_NvCSS/www/style.css

dev/test_dev/prostar_NvCSS/www/style0.css

dev/test_dev/prostar_NvCSS/www/style_tl1.css

dev/test_dev/prostar_NvCSS/www/style_tl2.css

dev/test_dev/prostar_NvCSS/www/style_tl3.css

dev/test_dev/prostar_NvCSS/www/style_tl4.css

dev/test_dev/prostar_NvCSS/www/style_tl5.css

dev/test_dev/prostar_NvCSS/www/style_tl6.css

dev/test_dev/prostar_NvCSS/www/timeline_h.PNG

dev/test_dev/prostar_NvCSS/www/timeline_v.PNG

dev/test_dev/shiny_bookmarks/1a185984d37ed0f7/input.rds

dev/test_dev/shiny_bookmarks/1a185984d37ed0f7/message.txt

dev/test_dev/shiny_bookmarks/30f0a0721ce741a4/input.rds

dev/test_dev/shiny_bookmarks/30f0a0721ce741a4/message.txt

dev/test_dev/shiny_bookmarks/37a5f6638b2cacd8/input.rds

dev/test_dev/shiny_bookmarks/37a5f6638b2cacd8/message.txt

dev/test_dev/shiny_bookmarks/38c191e658022322/input.rds

dev/test_dev/shiny_bookmarks/3f3bfa9febf6825f/input.rds

dev/test_dev/shiny_bookmarks/3f3bfa9febf6825f/message.txt

dev/test_dev/shiny_bookmarks/965d463a332f880b/input.rds

dev/test_dev/shiny_bookmarks/965d463a332f880b/message.txt

dev/test_dev/shiny_bookmarks/d24ce8c2396f777c/input.rds

dev/test_dev/shiny_bookmarks/d24ce8c2396f777c/message.txt

dev/test_dev/test-InOut-process-module.R dev/test_dev/test-inlineCSS_for_nav_module.R dev/test_dev/test-mod_bug_report.R dev/test_dev/test-mod_check-updates.R dev/test_dev/test-mod_filtering_protein.R dev/test_dev/test-mod_format_DT.R dev/test_dev/test-mod_homepage.R dev/test_dev/test-mod_import_file_from.R dev/test_dev/test-mod_infos_dataset.R dev/test_dev/test-mod_insert_md.R dev/test_dev/test-mod_loading_page.R dev/test_dev/test-mod_navbar_menu.R dev/test_dev/test-mod_navigation_for_WF.R dev/test_dev/test-mod_plots_cc.R dev/test_dev/test-mod_popover_for_help.R dev/test_dev/test-mod_release_notes.R dev/test_dev/test-mod_select_keyID.R dev/test_dev/test-mod_select_keyID_from_MSnset.R dev/test_dev/test-mod_settings.R dev/test_dev/test-nested_mod_navigation.R dev/test_dev/test-params-between-modules.R dev/test_dev/test-passing-parameters-through-n-modules.R dev/test_dev/test-return_R6.R dev/test_dev/test-return_module.R dev/test_dev/test-selectInput-Event.R dev/test_dev/test-session-between-modules.R dev/test_dev/test-session_userData.R dev/test_dev/test-shinyjs.R dev/test_dev/test_bookmarking.R dev/test_dev/test_bootstraplib_theme.R dev/test_dev/test_colourPicker_in_module.R dev/test_dev/test_confirm_modal.R dev/test_dev/test_create_theme.R dev/test_dev/test_dash_uiOutput_disabled.R dev/test_dev/test_disable_items_in_selectInput.R dev/test_dev/test_hot.R dev/test_dev/test_image_in_actionButton.R dev/test_dev/test_launch_process.R dev/test_dev/test_mod_bsmodal.R dev/test_dev/test_mod_change_assay.R dev/test_dev/test_mod_convert.R dev/test_dev/test_mod_det_quant_impute_Values.R dev/test_dev/test_mod_settings_with_module.R dev/test_dev/test_modal_in_module.R dev/test_dev/test_navbar_with_modules.R dev/test_dev/test_reactivity_modules_plots.R dev/test_dev/test_remove_module.R dev/test_dev/test_remove_module_2.R dev/test_dev/test_remove_module_3.R dev/test_dev/test_retour_multiples_modules.R dev/test_dev/test_selectInput.R dev/test_dev/test_shinyjs_in_module_separated.R dev/test_dev/test_single_process.R dev/test_dev/test_toto.R dev/test_dev/test_widget_icon.R

inst/CITATION

inst/NEWS.Rd

inst/NEWS.md inst/ProstarApp/Rmd_sources/GO_Classification_Rmd.Rmd inst/ProstarApp/Rmd_sources/GO_Enrichment_Rmd.Rmd inst/ProstarApp/Rmd_sources/aggregation_Rmd.Rmd inst/ProstarApp/Rmd_sources/anaDiff_Rmd.Rmd inst/ProstarApp/Rmd_sources/descriptiveStats_Rmd.Rmd inst/ProstarApp/Rmd_sources/filtering_Rmd.Rmd inst/ProstarApp/Rmd_sources/hypothesisTest_Rmd.Rmd inst/ProstarApp/Rmd_sources/imputation_Rmd.Rmd inst/ProstarApp/Rmd_sources/normalization_Rmd.Rmd inst/ProstarApp/Rmd_sources/peptideImputation_Rmd.Rmd inst/ProstarApp/Rmd_sources/proteinImputation_Rmd.Rmd inst/ProstarApp/Rmd_sources/report.Rmd inst/ProstarApp/global.R inst/ProstarApp/mod_bsmodal.R inst/ProstarApp/mod_bug_report.R inst/ProstarApp/mod_build_design.R inst/ProstarApp/mod_build_design_example.R inst/ProstarApp/mod_change_assay.R inst/ProstarApp/mod_check_updates.R inst/ProstarApp/mod_choose_pipeline.R inst/ProstarApp/mod_dataManager.R inst/ProstarApp/mod_homepage.R inst/ProstarApp/mod_infos_dataset.R inst/ProstarApp/mod_insert_md.R inst/ProstarApp/mod_launch_magellan.R inst/ProstarApp/mod_loading_page.R inst/ProstarApp/mod_main_page.R inst/ProstarApp/mod_navbar_menu.R inst/ProstarApp/mod_observe_dynamic_colourPicker_input.R inst/ProstarApp/mod_open_demoDataset.R inst/ProstarApp/mod_open_qf.R inst/ProstarApp/mod_popover_for_help.R inst/ProstarApp/mod_release_notes.R inst/ProstarApp/mod_settings.R inst/ProstarApp/mod_test.R

inst/ProstarApp/prostar.conf

inst/ProstarApp/run.R inst/ProstarApp/server.R inst/ProstarApp/ui.R inst/ProstarApp/utils_Prostar.R

inst/ProstarApp/www/busyIndicator/busyIndicator.css

inst/ProstarApp/www/css/_variables-Prostar.scss

inst/ProstarApp/www/css/_variables-cerulean.scss

inst/ProstarApp/www/css/arrow.css

inst/ProstarApp/www/css/image.css

inst/ProstarApp/www/css/legend.css

inst/ProstarApp/www/css/prostar.css

inst/ProstarApp/www/css/sass-size.scss

inst/ProstarApp/www/favicon.ico

inst/ProstarApp/www/flashExport.swf

inst/ProstarApp/www/google-analytics.html

inst/ProstarApp/www/google-analytics.js

inst/ProstarApp/www/google-analytics_localApp.html

inst/ProstarApp/www/images/LogoProstarComplet.png

inst/ProstarApp/www/images/Ok.png

inst/ProstarApp/www/images/Problem.png

inst/ProstarApp/www/images/Rlogo.svg

inst/ProstarApp/www/images/Sam.png

inst/ProstarApp/www/images/Thomas-Burger-155.jpg

inst/ProstarApp/www/images/ajax-loader.gif

inst/ProstarApp/www/images/arrow_direction_loop_reload.png

inst/ProstarApp/www/images/arrow_direction_rotate_1.png

inst/ProstarApp/www/images/cover.jpg

inst/ProstarApp/www/images/dfPriorIssue.png

inst/ProstarApp/www/images/edyp.png

inst/ProstarApp/www/images/logo_bioconductor.gif

inst/ProstarApp/www/logo-simple.png

inst/ProstarApp/www/logo-simple_32x32.png

inst/ProstarApp/www/progressBar/progressBar.css

man/Prostar.Rd vignettes/Build-a-pipeline-module.Rmd vignettes/Create-a-new-pipeline-tutorial.Rmd vignettes/Prostar2.Rmd vignettes/Prostar_dev_guideline.Rmd vignettes/Prostar_workflow_tutorial.Rmd vignettes/Prostar_workflow_userguide.Rmd

vignettes/figs/GO_tab1.png

vignettes/figs/GO_tab2.png

vignettes/figs/GO_tab3.png

vignettes/figs/GO_tab4.png

vignettes/figs/aggregation.png

vignettes/figs/anadiffsum.png

vignettes/figs/convert_convert.png

vignettes/figs/convert_dataID.png

vignettes/figs/convert_exp_featdata.png

vignettes/figs/convert_sampledata.png

vignettes/figs/convert_selectfile.png

vignettes/figs/cp4p-choice.png

vignettes/figs/cp4p-default.png

vignettes/figs/cp4p-ideal.png

vignettes/figs/cp4p-pb1.png

vignettes/figs/cp4p-pb2.png

vignettes/figs/desc_CVDist_ZoomIn.png

vignettes/figs/desc_CVDist_ZoomOut.png

vignettes/figs/desc_PCA.png

vignettes/figs/desc_corrmatrix.png

vignettes/figs/desc_fdata.png

vignettes/figs/desc_heatmap.png

vignettes/figs/desc_intdistrib.png

vignettes/figs/desc_missValues.png

vignettes/figs/desc_pdata.png

vignettes/figs/desc_quantiData.png

vignettes/figs/descstat-overview.png

vignettes/figs/equiv-non-fig.txt

vignettes/figs/export.png

vignettes/figs/fdr-thresh.png

vignettes/figs/filter1.png

vignettes/figs/filter2.png

vignettes/figs/filter3.png

vignettes/figs/home.png

vignettes/figs/hp.png

vignettes/figs/load-pep.png

vignettes/figs/load-prot.png

vignettes/figs/normalisation.png

vignettes/figs/peptide-basicImputation.png

vignettes/figs/peptide-imp4p.png

vignettes/figs/protein-MEC.png

vignettes/figs/protein-POV.png

vignettes/figs/pushpval.png

vignettes/schema tl_engine.pptx

samWieczorek/Prostar.2.0 documentation built on Dec. 4, 2022, 11:53 a.m.