Man pages for sanglee/EasyTCGA
EasyTCGA for batch TCGA data retrival from FireHose

dn_clinicalDownload available clinical data of multiple / all cohorts.
dn_clinical_oneDownload all available clinical data of one cohort.
dn_cohortsDownload all available cohorts / cancer types.
dn_miRSeqDownload sample-level log2 miRSeq expression values. Results...
dn_miRSeq_cohortDownload all available sample-level log2 miRSeq expression...
dn_mRNASeqDownload sample-level log2 mRNASeq expression values. Results...
dn_mRNASeq_cohortDownload all available sample-level log2 mRNASeq expression...
dn_mutation_cohortDownload selected columns from the MAF generated by MutSig...
dn_mutation.ExpDownload selected columns from the MAF generated by MutSig....
dn_mutation.SMG_cohortDownload selected columns from the MAF generated by MutSig...
dn_mutation.SMG.ExpDownload significantly mutated genes, as scored by MutSig....
helloHello, World!
patient_barcodesExtract TCGA patient barcodes from clinical data.
reshape.miRSeqReshape sample-level log2 miRSeq expression values of the...
reshape.mRNASeqReshape sample-level log2 mRNASeq expression values of the...
sanglee/EasyTCGA documentation built on May 26, 2017, 12:29 a.m.