API for satyausc/methylDNAshapeHTmethod
Reproduce all the plots used in the paper "methylDNAshape"

Global functions
CpG_containing_motifs_from_MotifDb Source code
DNaseI_prepare_validation_figure Source code
a_tracts_box_plot Source code
add_text_to_ggplot Source code
assing_significance_label Source code
calculate_a_tracts_paired_t_test_values Source code
calculate_statistics_of_a_tracts Source code
data_subset Source code
figure1_theme Source code
figure3_theme Source code
figure4_panelA_DNaseI_revisited Source code
figure4_panelB_DNaseI_revisited Source code
figure4_panelC_DNaseI_revisited Source code
figure5_delta_theme Source code
findCommonObservations Source code
fmt_dcimals Source code
fun Source code
generate_shape_scatter_and_box_plots Source code
getHexamersAndResponse Source code
get_pentamer_data_from_QueryTable Source code
gg_color_hue Source code
increase_distance_between_keys Source code
make_figure1 Source code
make_figure2 Source code
make_figure3 Source code
make_figure4 Source code
modify_yaml_data_for_shape_scatter_and_delta_plot Source code
one_sample_t_test Source code
plot_margin_manual Source code
plot_margin_manual_all_sides Source code
plot_motif_counts Source code
plot_rcsb Source code
plot_rcsb_statistics Source code
prepare_data_for_box_plot Source code
prepare_data_for_scatter_plot Source code
pretty_breaks_x Source code
pretty_breaks_y Source code
profile_shape_delta_plot Source code
profile_shape_scatter_plot Source code
put_r_square_value Source code
remove_column_from_each_features Source code
return_tuple Source code
reverse_complement Source code
roundUp Source code
roundUpNice Source code
scaleFUN Source code
selectSubsetFromDNaseIdata Source code
set_axis_limits Source code
t_test Source code
wx_test Source code
satyausc/methylDNAshapeHTmethod documentation built on Dec. 20, 2017, 4:11 a.m.