README_badges.md

In sbalci/jsurvival: Survival Module of ClinicoPath for jamovi

README Badges and Widgets for jsurvival

Status Badges

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jamovi Module Specific

Package Information

Documentation and Support

Download and Usage Stats

Installation Widgets

jamovi Installation

## Installation in jamovi

### Option 1: jamovi Library (Recommended)
1. Open jamovi
2. Click on the **+** button in the top-right corner
3. Select **jamovi library**
4. Search for "ClinicoPath" or "jsurvival"
5. Click **Install**

### Option 2: Manual Installation
1. Download the latest `.jmo` file from [releases](https://github.com/sbalci/jsurvival/releases)
2. Open jamovi
3. Click **+** → **Sideload** → Select the `.jmo` file

R Package Installation

## Installation as R Package

### From GitHub (Development Version)
```r
# Install devtools if you haven't already
install.packages("devtools")

# Install jsurvival
devtools::install_github("sbalci/jsurvival")

Dependencies

This package requires R ≥ 4.1.0 and depends on: - survival, survminer, finalfit - ggplot2, dplyr, tidyr - jmvcore, R6

## Feature Highlights

### Analysis Types Available
```markdown
## 📊 Available Analyses

| Analysis | Description | Use Case |
|----------|-------------|----------|
| **Single Arm Survival** | Overall survival for entire cohort | Population-level survival estimates |
| **Survival Analysis** | Univariate Cox regression & Kaplan-Meier | Group comparisons, risk factors |
| **Continuous Variable Survival** | Cut-off analysis for continuous predictors | Biomarker threshold analysis |
| **Multivariable Survival** | Adjusted Cox regression models | Multiple risk factors |
| **Odds Ratio Analysis** | Binary outcome analysis | Case-control studies |
| **Time Interval Calculator** | Calculate time differences | Data preparation |

Output Features

## 🎯 Key Features

- **📈 Kaplan-Meier Curves** with risk tables and confidence intervals
- **📊 Survival Tables** with 1, 3, 5-year survival rates
- **🔢 Natural Language Summaries** of results
- **📋 Hazard Ratio Tables** with confidence intervals
- **⚕️ Clinical Research Focus** designed for medical studies
- **🌐 Multi-language Support** (English, Turkish, German)

Example Usage Widget

## 🚀 Quick Start Example

### In jamovi:
1. Load your survival data
2. Go to **Survival** → **ClinicoPath Survival** → **Survival Analysis**
3. Set **Time Elapsed** variable (time to event)
4. Set **Explanatory** variable (grouping factor)
5. Set **Outcome** variable (event indicator)
6. Click **Run**

### Sample Output:
- Median survival times with 95% CI
- Log-rank test p-values
- Hazard ratios with confidence intervals
- Kaplan-Meier survival curves
- Risk tables at specified time points

Citation Widget

## 📝 Citation

If you use jsurvival in your research, please cite:

Balci, S. (2024). jsurvival: Survival Module of ClinicoPath for jamovi. R package version 0.0.3.21. https://github.com/sbalci/jsurvival

**BibTeX:**
```bibtex
@Manual{jsurvival,
  title = {jsurvival: Survival Module of ClinicoPath for jamovi},
  author = {Serdar Balci},
  year = {2024},
  note = {R package version 0.0.3.21},
  url = {https://github.com/sbalci/jsurvival},
}

## Related Projects Widget

```markdown
## 🔗 Related Projects

| Project | Description | Link |
|---------|-------------|------|
| **ClinicoPath** | Main jamovi module suite | [![ClinicoPath](https://img.shields.io/badge/GitHub-ClinicoPath-blue)](https://github.com/sbalci/ClinicoPathJamoviModule) |
| **jamovi** | Statistical software platform | [![jamovi](https://img.shields.io/badge/jamovi.org-platform-blue)](https://www.jamovi.org) |
| **Survival Analysis Tutorial** | Learn survival analysis | [![Tutorial](https://img.shields.io/badge/tutorial-survival-green)](https://www.emilyzabor.com/tutorials/survival_analysis_in_r_tutorial.html) |

Support Widget

## 💬 Support & Community

- 🐛 **Report Issues**: [GitHub Issues](https://github.com/sbalci/ClinicoPathJamoviModule/issues/)
- 📧 **Contact**: [e-mail]
- 🌐 **Website**: [ClinicoPath Documentation](https://sbalci.github.io/ClinicoPathJamoviModule/)
- 📖 **Package Documentation**: [jsurvival docs](https://www.serdarbalci.com/jsurvival/)

[![ORCID](https://img.shields.io/badge/ORCID-0000--0002--7852--3851-green)](https://orcid.org/0000-0002-7852-3851)

sbalci/jsurvival documentation built on July 4, 2025, 5:26 p.m.