S4 generic functions for Bioconductor

annotation | Accessing annotation information |

append | Append elements to a vector-like object |

as.data.frame | Coerce an object into a data frame |

as.vector | Coerce an object into a vector |

BiocGenerics-package | S4 generic functions for Bioconductor |

boxplot | Box plots |

cbind | Combine objects by rows or columns |

clusterApply | Apply operations using clusters |

combine | Combining or merging different Bioconductor data structures |

dbconn | Accessing SQLite DB information |

density | Kernel density estimation |

dge | Accessors and generic functions used in the context of count... |

do.call | Execute a function call |

duplicated | Determine duplicate elements |

eval | Evaluate an (unevaluated) expression |

evalq | Evaluate an (unevaluated) expression |

Extremes | Maxima and minima |

fileName | Accessing the file name of an object |

funprog | Common higher-order functions in functional programming... |

get | Return the value of a named object |

grep | Pattern Matching and Replacement |

image | Display a color image |

IQR | The Interquartile Range |

is.unsorted | Test if a vector-like object is not sorted |

lapply | Apply a function over a list-like or vector-like object |

lengths | Lengths of the list elements of a list-like object |

mad | Median Absolute Deviation |

mapply | Apply a function to multiple list-like or vector-like... |

match | Value matching |

matrix-summary | Form Row and Column Sums and Means |

mean | Arithmetic Mean |

normalize | Normalize an object |

nrow | The number of rows/columns of an array-like object |

order | Ordering permutation |

organism_species | Organism and species accessors |

paste | Concatenate strings |

plotMA | MA-plot: plot differences versus averages for high-throughput... |

plotPCA | PCA-plot: Principal Component Analysis plot |

rank | Ranks the values in a vector-like object |

relist | Re-listing an unlist()ed object |

rep | Replicate elements of a vector-like object |

residuals | Extract model residuals |

row_colnames | Row and column names |

S3-classes-as-S4-classes | S3 classes as S4 classes |

score | Score accessor |

sets | Set operations |

sort | Sorting a vector-like object |

start | Start, end, width generic getters and setters |

strand | Accessing strand information |

subset | Subsetting vector-like, matrix-like and data-frame-like... |

t | Matrix Transponse |

table | Cross tabulation and table creation |

tapply | Apply a function over a ragged array |

testPackage | Run RUnit package unit tests |

unique | Extract unique elements |

unlist | Flatten list-like objects |

unsplit | Unsplit a list-like object |

updateObject | Update an object to its current class definition |

var | Variance and Standard Deviation |

weights | Extract model weights |

which | Subscript generators |

xtabs | Cross tabulation |

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