Description Usage Arguments Value
View source: R/read_quality_report.R
Processes fastq files to look at read counts, read lengths,
and at what read cycle the quality drops below the q
quality threshold.
1 | read_quality_report(path, q = 20, k = 3, n = 5e+06, cores = 1)
|
path |
File path(s) to fastq or fastq.gz file(s). |
q |
Quality score cutoff for the read. Will look at the mean average score for
|
k |
number of bases beyond the current to consider for quality cutoff. |
n |
The number of records to sample from the fastq file. |
cores |
The number of CPU cores/threads to use. |
data.table
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