simple_dada: simple_dada

In schuyler-smith/simple.dada: Runs a simplified DADA2 routine

Description

Runs through the DADA2 routine with dynamic paramter assignment. In situations where the data is clean this will work well. If the data is not clean, it will be bet to either run the DADA2 routine. or each sub-function.

Usage

simple_dada(path, paired = TRUE, cores = 0)

Arguments

path	Directory containing raw fastq files.
paired	Whether or not the program should look for forward (R1) and reverse (R2) fastq files.
cores	The number of CPU cores/threads to use.

Value

data.table

schuyler-smith/simple.dada documentation built on Jan. 28, 2020, 8:32 a.m.