| aem | Construct asymmetric eigenvector maps (AEM) |
| aem.build.binary | Construct a site-by-edge binary matrix |
| aem.time | AEM for time series |
| aem.weight.edges | Weight edges when constructing AEM variables |
| bacProdxy | Bacterial production data set |
| beta.div | Beta diversity computed as Var(Y) |
| beta.div.comp | Decompose D in replacement and richness difference components |
| chooseCN | Function to choose a connection network |
| constr.hclust | Space- And Time-Constrained Clustering |
| constr.hclust-class | Class For Constrained Hiereachical Clustering |
| Cperiodogram | Contingency periodogram |
| create.dbMEM.model | Combine dbMEM matrices corresponding to groups of sites |
| dbmem | dbMEM spatial eigenfunctions |
| directional.response | Directional indices of community change |
| dist.ldc | Dissimilarity matrices for community composition data |
| envspace.test | Perform a test of the shared space-environment fraction of a... |
| forward.sel | Forward selection with multivariate Y using permutation under... |
| forward.sel.par | Parametric forward selection of explanatory variables in... |
| give.thresh | Compute the maximum distance of the minimum spanning tree... |
| global.rtest | Global and local tests |
| LCBD.comp | Compute LCBD from any D matrix |
| listw.candidates | Function to create a list of spatial weighting matrices |
| listw.explore | Interactive tool to generate R code that creates a spatial... |
| listw.select | Function to optimize the selection of a spatial weighting... |
| mastigouche | Mastigouche Lake network data set |
| mem | Function to compute and manage Moran's Eigenvector Maps (MEM)... |
| mem.select | Selection of the best subset of spatial eigenvectors (MEM,... |
| mfpa | Multi-frequential periodogram analysis |
| moran.bounds | Function to compute extreme values of Moran's I |
| moranNP.randtest | Function to compute positive and negative parts of Moran's... |
| moran.randtest | Function to compute Moran's index of spatial autocorrelation |
| mspa | Multi-Scale Pattern Analysis |
| msr | Moran spectral randomization |
| msr.4thcorner | Moran spectral randomization for fourth-corner analysis |
| msr.mantelrtest | Moran spectral randomization for Mantel test |
| msr.varipart | Moran spectral randomization for variation partitioning |
| mst.nb | Function to compute neighborhood based on the minimum... |
| multispati | Multivariate spatial analysis |
| ortho.AIC | Compute AIC for models with orthonormal explanatory variables |
| orthobasis.poly | Function to compute polynomial of geographical coordinates |
| plot.constr.hclust | Plotting Method For Space- And Time-Constrained Clustering |
| plot.orthobasisSp | Function to display Moran's Eigenvector Maps (MEM) and other... |
| plot.TBI | Plots of the outputs of a temporal beta diversity analysis |
| rotation | Rotate a set of point by a certain angle |
| scalogram | Function to compute a scalogram |
| ScotchWhiskey | Scotch Whiskey Data Set |
| stimodels | Space-time interaction in ANOVA without replication |
| TBI | TBI: Difference between multivariate observations at T1 and... |
| test.W | Function to compute and test eigenvectors of spatial... |
| Tiahura | Tiahura Transect Fish Data Set |
| tpaired.krandtest | Paired t-tests of differences between T1 and T2 for each... |
| tpaired.randtest | Permutational paired t-test |
| trichoptera | Trichoptera data set |
| variogmultiv | Function to compute multivariate empirical variogram |
| WRperiodogram | Whittaker-Robinson periodogram |
