API for sebastianduchene/NELSI
NELSI: Nucleotide EvoLution Simulator
| Global functions | |
|---|---|
| .annotated.clado.build | Source code |
| .annotated.tree.build | Source code |
| .parse.traits | Source code |
| .parse.value | Source code |
| .split.tree.names | Source code |
| .split.tree.traits | Source code |
| .strip.annotations | Source code |
| NELSI | Man page |
| NELSI-package | Man page |
| allnode.times | Man page Source code |
| dist.topo.normalised | Source code |
| distunlab | Source code |
| find.monophyletic | Source code |
| find.sister | Source code |
| get.ancestor.nodes.branches | Source code |
| get.branches.age.sorted | Source code |
| get.clock.data | Man page Source code |
| get.deepest.br.length | Source code |
| get.descending.nodes.branches | Source code |
| get.df | Source code |
| get.external.branch.length | Source code |
| get.first.node.height | Source code |
| get.internal.branch.length | Source code |
| get.lineage.time.rate | Man page Source code |
| get.ltt.summary | Source code |
| get.mrca | Source code |
| get.oldest.branch.length | Source code |
| get.ordinates | Source code |
| get.rate.descendant.pairs | Man page Source code |
| get.rtt.dist | Source code |
| get.tree.data.matrix | Man page Source code |
| getLabelFromPairs | Source code |
| intnode.times | Source code |
| is.polytomy | Source code |
| labeldistance | Source code |
| make.lsd.dates | Source code |
| mid.edge.ages | Man page Source code |
| node.to.tip.dist | Source code |
| pathnode | Man page Source code |
| plot.ratesim | Man page Source code |
| plotlabels | Source code |
| read.annotated.nexus | Man page |
| read.annotated.tree | Man page |
| simulate.FLC | Source code |
| simulate.autocor.kishino | Man page Source code |
| simulate.autocor.thorne | Man page Source code |
| simulate.clock | Man page Source code |
| simulate.dpp | Man page Source code |
| simulate.rate | Man page Source code |
| simulate.tdep.ho | Man page Source code |
| simulate.uncor.exp | Man page Source code |
| simulate.uncor.gamma | Man page Source code |
| simulate.uncor.lnorm | Man page Source code |
| simulate.white.noise | Man page Source code |
| stemmy | Source code |
| sum.descending.branches | Source code |
| trann2trdat | Man page Source code |
| treelabels | Source code |
