plot_posteriors_theta: Plot inferred posteriors theta

In seroanalytics/serosolver: Inference Framework for Serological Data

Plot inferred posteriors theta

Description

Produces and saves estimated posterior distributions for the antibody kinetics parameters

Usage

plot_posteriors_theta(
  chain,
  par_tab,
  burnin = 0,
  samples = 100,
  calculate_ess = TRUE,
  plot_corr = TRUE,
  save_plots = FALSE,
  plot_mcmc = TRUE,
  save_loc = ""
)

Arguments

chain	the full MCMC chain to generate titre trajectories from
par_tab	the table controlling the parameters in the MCMC chain
burnin	if not already discarded, discard burn in from chain (takes rows where sampno > burnin)
samples	how many samples from the chain to take
calculate_ess	if TRUE, calculates the ESS for all free parameters
plot_corr	if TRUE, returns a pairwise correlation plot of free parameters
save_plots	if TRUE, directly saves the plots as svgs
plot_mcmc	if TRUE, plots the MCMC chain traces
save_loc	the full directory path of where to save plots

Value

a list of ggplot objects and a data frame of estimates

See Also

Other theta_plots: plot_samples_distances()

Examples

## Not run: 
data(example_theta_chain)
data(example_par_tab)
plot_posteriors_theta(example_theta_chain,example_par_tab,samples=100)

## End(Not run)

seroanalytics/serosolver documentation built on April 24, 2023, 9:52 a.m.