presence_of_asvs_over_percentage: Presence of ASVs over a certain percentage This function...
In sgavril/equinizeR: Manage Equine Marker Gene Data
Description
Presence of ASVs over a certain percentage
This function checks for ASVs that are above a proportional abundance (in percentage)
at a user specified confidence threshold (also as a percentage)
Usage
1
2
presence_of_asvs_over_percentage(asv_table, percentage, confidence,
sample_indices)
Arguments
asv_table
The custom ASV table generated by the DADA2 pipeline
percentage
The minimum proportional abundance for an ASV as a percentage
confidence
The confidence threshold for checking ASV abundances
sgavril/equinizeR documentation built on June 15, 2019, 2:44 p.m.
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Description
Presence of ASVs over a certain percentage This function checks for ASVs that are above a proportional abundance (in percentage) at a user specified confidence threshold (also as a percentage)
Usage
1 2 | presence_of_asvs_over_percentage(asv_table, percentage, confidence,
sample_indices)
|
Arguments
asv_table |
The custom ASV table generated by the DADA2 pipeline |
percentage |
The minimum proportional abundance for an ASV as a percentage |
confidence |
The confidence threshold for checking ASV abundances |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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