This R package provides some some examples to demonstrate how to analyze mass spectrometry data using MALDIquant.
MALDIquant provides a complete analysis pipeline for MALDI-TOF and other mass spectrometry data. Distinctive features include baseline subtraction methods such as TopHat or SNIP, peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.
Please visit: https://strimmerlab.github.io/software/maldiquant/index.html
Analysis of Fiedler et al. 2009 using MALDIquant vignette, R code
Bacterial Species Determination using MALDIquant vignette, R code
R code to reproduce figure 1 used in Gibb and Strimmer 2012 ([colorized version] (https://github.com/sgibb/MALDIquantExamples/blob/master/R/createFigure1_color.R)).
GitHub is not supported by the basic install.packages
command. You could use the
devtools package
to install MALDIquantExamples.
install.packages("devtools")
library("devtools")
install_github("sgibb/MALDIquantExamples")
You are welcome to:
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